Analysis of interatomic Contacts of Structural Units in PDB entry:
8I0A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8I0A entry

There is 1 chain in PDB entry 8I0A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11GLN 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8I0A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 31Right-handed 310
Helix 2
AA2
A
62 66Right-handed 310
Helix 3
AA3
A
70 74Right-handed 310
Helix 4
AA4
A
80 90Right-handed alpha
Helix 5
AA5
A
101 107Right-handed 310
Helix 6
AA6
A
108 113Right-handed 310
Helix 7
AA7
A
115 119Right-handed 310
Helix 8
AA8
A
136 148Right-handed alpha
Helix 9
AA9
A
161 174Right-handed alpha
Helix 10
AB1
A
178 189Right-handed alpha
Helix 11
AB2
A
215 234Right-handed alpha
Helix 12
AB3
A
248 259Right-handed alpha
Helix 13
AB4
A
280 282Right-handed 310
Helix 14
AB5
A
283 290Right-handed alpha
Helix 15
AB6
A
292 313Right-handed alpha
Helix 16
AB7
A
345 362Right-handed alpha
Helix 17
AB8
A
393 404Right-handed alpha
Helix 18
AB9
A
426 432Right-handed alpha
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There are 4 sheets in PDB entry 8I0A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 513first strand
Strand 2
A
482 488anti-parallel
Strand 3
A
524 532anti-parallel
Strand 4
A
453 461anti-parallel
Strand 5
A
438 446anti-parallel
Strand 6
A
408 415anti-parallel
Strand 7
A
13 24anti-parallel
Strand 8
A
468 474parallel
Strand 9
A
517 520anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
95 98parallel
Strand 3
A
150 154parallel
Strand 4
A
198 200parallel
Strand 5
A
238 242parallel
Strand 6
A
264 271parallel
Strand 7
A
320 328parallel
Strand 8
A
366 371parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
130 131anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
388 390anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il