Analysis of interatomic Contacts of Structural Units in PDB entry:
8I0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8I0D entry

There is 1 chain in PDB entry 8I0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2GLN 456
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8I0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 31Right-handed alpha
Helix 2
AA2
A
43 50Right-handed alpha
Helix 3
AA3
A
53 57Right-handed 310
Helix 4
AA4
A
79 90Right-handed alpha
Helix 5
AA5
A
92 107Right-handed alpha
Helix 6
AA6
A
121 130Right-handed alpha
Helix 7
AA7
A
140 149Right-handed alpha
Helix 8
AA8
A
149 158Right-handed alpha
Helix 9
AA9
A
169 175Right-handed alpha
Helix 10
AB1
A
182 186Right-handed 310
Helix 11
AB2
A
187 192Right-handed 310
Helix 12
AB3
A
197 210Right-handed alpha
Helix 13
AB4
A
211 213Right-handed 310
Helix 14
AB5
A
221 224Right-handed 310
Helix 15
AB6
A
225 234Right-handed alpha
Helix 16
AB7
A
244 249Right-handed alpha
Helix 17
AB8
A
260 267Right-handed alpha
Helix 18
AB9
A
286 301Right-handed alpha
Helix 19
AC1
A
309 315Right-handed alpha
Helix 20
AC2
A
319 324Right-handed alpha
Helix 21
AC3
A
335 341Right-handed alpha
Helix 22
AC4
A
353 363Right-handed alpha
Helix 23
AC5
A
376 387Right-handed alpha
Helix 24
AC6
A
395 398Right-handed 310
Helix 25
AC7
A
400 413Right-handed alpha
Helix 26
AC8
A
414 436Right-handed alpha
Helix 27
AC9
A
439 454Right-handed alpha
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There are 2 sheets in PDB entry 8I0D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 66first strand
Strand 2
A
35 42parallel
Strand 3
A
5 10parallel
Strand 4
A
112 116parallel
Strand 5
A
133 137parallel
Strand 6
A
215 218parallel
Strand 7
A
239 241parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 331first strand
Strand 2
A
304 307parallel
Strand 3
A
274 278parallel
Strand 4
A
345 350parallel
Strand 5
A
367 369parallel
Strand 6
A
391 393parallel
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