Analysis of interatomic Contacts of Structural Units in PDB entry:
8I0Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8I0Q entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 8I0Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	SER 368
B	THR 6	SER 368
H	VAL 5	SER 122
I	VAL 5	SER 122
L	SER 1	GLU 106
M	SER 1	GLU 106
U	GLU 343	GLU 343
U	GLU 345	GLU 345
U	PHE 349	HIS 350
V	GLU 343	GLU 343
V	GLU 345	GLU 345
V	PHE 349	HIS 350

There are 16 helices in PDB entry 8I0Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	90	94	Right-handed 310
Helix 2	AA2	A	98	109	Right-handed alpha
Helix 3	AA3	A	278	282	Right-handed 310
Helix 4	AA4	A	307	311	Right-handed 310
Helix 5	AA5	A	335	339	Right-handed 310
Helix 6	AA6	B	90	94	Right-handed 310
Helix 7	AA7	B	98	109	Right-handed alpha
Helix 8	AA8	B	278	282	Right-handed 310
Helix 9	AA9	B	307	311	Right-handed 310
Helix 10	AB1	B	335	339	Right-handed 310
Helix 11	AB2	H	65	68	Right-handed 310
Helix 12	AB3	H	90	94	Right-handed 310
Helix 13	AB4	I	65	68	Right-handed 310
Helix 14	AB5	I	90	94	Right-handed 310
Helix 15	AB6	L	80	84	Right-handed 310
Helix 16	AB7	M	80	84	Right-handed 310

There are 24 sheets in PDB entry 8I0Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	118	first strand
Strand 2	A	36	42	anti-parallel
Strand 3	A	19	22	anti-parallel
Strand 4	A	7	12	anti-parallel
Strand 5	V	345	348	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	164	171	parallel
Strand 3	A	141	150	anti-parallel
Strand 4	A	53	64	anti-parallel
Strand 5	A	74	87	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	164	171	parallel
Strand 3	A	141	150	anti-parallel
Strand 4	A	127	129	anti-parallel
Strand 5	A	288	289	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	188	first strand
Strand 2	A	197	203	anti-parallel
Strand 3	A	214	222	anti-parallel
Strand 4	A	266	274	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	258	first strand
Strand 2	A	228	242	anti-parallel
Strand 3	A	318	329	anti-parallel
Strand 4	A	343	349	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	118	first strand
Strand 2	B	36	43	anti-parallel
Strand 3	B	18	22	anti-parallel
Strand 4	B	7	12	anti-parallel
Strand 5	U	345	348	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	29	first strand
Strand 2	B	164	172	parallel
Strand 3	B	141	150	anti-parallel
Strand 4	B	53	64	anti-parallel
Strand 5	B	74	87	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	29	first strand
Strand 2	B	164	172	parallel
Strand 3	B	141	150	anti-parallel
Strand 4	B	127	129	anti-parallel
Strand 5	B	288	289	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	188	first strand
Strand 2	B	197	203	anti-parallel
Strand 3	B	214	222	anti-parallel
Strand 4	B	266	274	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	258	first strand
Strand 2	B	228	242	anti-parallel
Strand 3	B	318	329	anti-parallel
Strand 4	B	343	349	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	10	first strand
Strand 2	H	23	26	anti-parallel
Strand 3	H	81	86	anti-parallel
Strand 4	H	71	76	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	15	first strand
Strand 2	H	120	121	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	61	63	first strand
Strand 2	H	49	54	anti-parallel
Strand 3	H	35	42	anti-parallel
Strand 4	H	96	103	anti-parallel
Strand 5	H	112	113	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	61	63	first strand
Strand 2	H	49	54	anti-parallel
Strand 3	H	35	42	anti-parallel
Strand 4	H	96	103	anti-parallel
Strand 5	H	117	118	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	8	10	first strand
Strand 2	I	23	26	anti-parallel
Strand 3	I	81	86	anti-parallel
Strand 4	I	71	76	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	14	15	first strand
Strand 2	I	120	121	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	61	63	first strand
Strand 2	I	49	54	anti-parallel
Strand 3	I	35	42	anti-parallel
Strand 4	I	96	103	anti-parallel
Strand 5	I	112	113	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	61	63	first strand
Strand 2	I	49	54	anti-parallel
Strand 3	I	35	42	anti-parallel
Strand 4	I	96	103	anti-parallel
Strand 5	I	117	118	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	6	8	first strand
Strand 2	L	20	25	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	104	106	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	54	55	first strand
Strand 2	L	46	50	anti-parallel
Strand 3	L	34	39	anti-parallel
Strand 4	L	86	91	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	5	8	first strand
Strand 2	M	20	26	anti-parallel
Strand 3	M	71	76	anti-parallel
Strand 4	M	63	68	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	13	first strand
Strand 2	M	104	106	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	54	55	first strand
Strand 2	M	46	50	anti-parallel
Strand 3	M	34	39	anti-parallel
Strand 4	M	86	91	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8I0Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
8I0Q