Analysis of interatomic Contacts of Structural Units in PDB entry:
8I13

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8I13 entry

There are 6 chains in PDB entry 8I13 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 76	PRO 1104
A	PRO 32	CYS 1065
C	LEU 3	LEU 267
F	PRO 11	ILE 336
G	ASP 11	ILE 303
H	SER 39	ASP 402

There are100 helices in PDB entry 8I13. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	118	127	Right-handed alpha
Helix 2	AA2	B	129	134	Right-handed alpha
Helix 3	AA3	B	165	170	Right-handed alpha
Helix 4	AA4	B	200	210	Right-handed alpha
Helix 5	AA5	B	217	219	Right-handed 310
Helix 6	AA6	B	223	232	Right-handed alpha
Helix 7	AA7	B	235	245	Right-handed alpha
Helix 8	AA8	B	248	285	Right-handed alpha
Helix 9	AA9	B	295	432	Right-handed alpha
Helix 10	AB1	B	433	462	Right-handed alpha
Helix 11	AB2	B	465	494	Right-handed alpha
Helix 12	AB3	B	513	525	Right-handed alpha
Helix 13	AB4	B	526	528	Right-handed 310
Helix 14	AB5	B	546	548	Right-handed 310
Helix 15	AB6	B	549	562	Right-handed alpha
Helix 16	AB7	B	568	583	Right-handed alpha
Helix 17	AB8	B	600	604	Right-handed 310
Helix 18	AB9	B	611	615	Right-handed alpha
Helix 19	AC1	B	620	632	Right-handed alpha
Helix 20	AC2	B	641	651	Right-handed alpha
Helix 21	AC3	B	696	759	Right-handed alpha
Helix 22	AC4	B	768	883	Right-handed alpha
Helix 23	AC5	B	884	890	Right-handed alpha
Helix 24	AC6	B	896	918	Right-handed alpha
Helix 25	AC7	B	921	984	Right-handed alpha
Helix 26	AC8	B	1017	1019	Right-handed 310
Helix 27	AC9	B	1020	1037	Right-handed alpha
Helix 28	AD1	B	1054	1072	Right-handed alpha
Helix 29	AD2	A	74	85	Right-handed alpha
Helix 30	AD3	A	89	94	Right-handed alpha
Helix 31	AD4	A	158	169	Right-handed alpha
Helix 32	AD5	A	181	190	Right-handed alpha
Helix 33	AD6	A	192	205	Right-handed alpha
Helix 34	AD7	A	205	261	Right-handed alpha
Helix 35	AD8	A	269	384	Right-handed alpha
Helix 36	AD9	A	396	443	Right-handed alpha
Helix 37	AE1	A	444	448	Right-handed 310
Helix 38	AE2	A	452	458	Right-handed 310
Helix 39	AE3	A	459	460	Right-handed 310
Helix 40	AE4	A	461	475	Right-handed alpha
Helix 41	AE5	A	475	480	Right-handed alpha
Helix 42	AE6	A	494	505	Right-handed alpha
Helix 43	AE7	A	506	511	Right-handed alpha
Helix 44	AE8	A	525	530	Right-handed alpha
Helix 45	AE9	A	549	555	Right-handed alpha
Helix 46	AF1	A	569	580	Right-handed alpha
Helix 47	AF2	A	581	584	Right-handed 310
Helix 48	AF3	A	593	602	Right-handed alpha
Helix 49	AF4	A	660	781	Right-handed alpha
Helix 50	AF5	A	783	826	Right-handed alpha
Helix 51	AF6	A	827	835	Right-handed alpha
Helix 52	AF7	A	836	839	Right-handed 310
Helix 53	AF8	A	841	847	Right-handed alpha
Helix 54	AF9	A	847	859	Right-handed alpha
Helix 55	AG1	A	862	869	Right-handed alpha
Helix 56	AG2	A	871	876	Right-handed alpha
Helix 57	AG3	A	884	948	Right-handed alpha
Helix 58	AG4	A	960	964	Right-handed 310
Helix 59	AG5	A	987	1002	Right-handed alpha
Helix 60	AG6	A	1021	1036	Right-handed alpha
Helix 61	AG7	C	15	24	Right-handed alpha
Helix 62	AG8	C	29	52	Right-handed alpha
Helix 63	AG9	C	58	99	Right-handed alpha
Helix 64	AH1	C	105	115	Right-handed alpha
Helix 65	AH2	C	121	128	Right-handed alpha
Helix 66	AH3	C	141	147	Right-handed alpha
Helix 67	AH4	C	161	166	Right-handed 310
Helix 68	AH5	C	206	214	Right-handed alpha
Helix 69	AH6	C	238	267	Right-handed alpha
Helix 70	AH7	F	13	27	Right-handed alpha
Helix 71	AH8	F	33	47	Right-handed alpha
Helix 72	AH9	F	56	79	Right-handed alpha
Helix 73	AI1	F	151	168	Right-handed alpha
Helix 74	AI2	F	182	195	Right-handed alpha
Helix 75	AI3	F	214	218	Right-handed 310
Helix 76	AI4	F	224	237	Right-handed alpha
Helix 77	AI5	F	251	258	Right-handed alpha
Helix 78	AI6	F	260	265	Right-handed alpha
Helix 79	AI7	F	306	315	Right-handed alpha
Helix 80	AI8	G	12	25	Right-handed alpha
Helix 81	AI9	G	25	42	Right-handed alpha
Helix 82	AJ1	G	48	62	Right-handed alpha
Helix 83	AJ2	G	69	83	Right-handed alpha
Helix 84	AJ3	G	134	151	Right-handed alpha
Helix 85	AJ4	G	177	194	Right-handed alpha
Helix 86	AJ5	G	201	212	Right-handed alpha
Helix 87	AJ6	G	226	237	Right-handed alpha
Helix 88	AJ7	G	259	266	Right-handed alpha
Helix 89	AJ8	G	267	280	Right-handed alpha
Helix 90	AJ9	G	282	287	Right-handed 310
Helix 91	AK1	G	289	298	Right-handed alpha
Helix 92	AK2	H	43	72	Right-handed alpha
Helix 93	AK3	H	74	92	Right-handed alpha
Helix 94	AK4	H	97	121	Right-handed alpha
Helix 95	AK5	H	131	140	Right-handed alpha
Helix 96	AK6	H	219	227	Right-handed alpha
Helix 97	AK7	H	293	301	Right-handed alpha
Helix 98	AK8	H	307	311	Right-handed 310
Helix 99	AK9	H	359	371	Right-handed alpha
Helix 100	AL1	H	388	395	Right-handed alpha

There are 20 sheets in PDB entry 8I13. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	82	88	anti-parallel
Strand 3	B	149	157	anti-parallel
Strand 4	B	172	180	anti-parallel
Strand 5	B	186	190	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	1043	1047	parallel
Strand 3	B	1076	1081	parallel
Strand 4	B	104	108	parallel
Strand 5	B	1098	1100	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	616	618	first strand
Strand 2	B	540	542	anti-parallel
Strand 3	B	689	690	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	566	first strand
Strand 2	B	591	592	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	636	638	first strand
Strand 2	B	658	661	parallel
Strand 3	B	667	672	anti-parallel
Strand 4	B	676	681	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	990	995	first strand
Strand 2	B	1000	1006	anti-parallel
Strand 3	B	1013	1015	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	59	first strand
Strand 2	A	41	48	anti-parallel
Strand 3	A	111	117	anti-parallel
Strand 4	A	134	140	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	68	first strand
Strand 2	A	1043	1048	parallel
Strand 3	A	1010	1013	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	155	156	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	491	492	first strand
Strand 2	A	566	567	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	515	first strand
Strand 2	A	536	538	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	561	first strand
Strand 2	A	586	588	anti-parallel
Strand 3	A	613	616	parallel
Strand 4	A	619	625	anti-parallel
Strand 5	A	633	639	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	950	956	first strand
Strand 2	A	965	971	anti-parallel
Strand 3	A	979	980	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	184	first strand
Strand 2	C	189	190	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	205	first strand
Strand 2	C	194	197	anti-parallel
Strand 3	C	235	236	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	85	first strand
Strand 2	F	132	137	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	207	208	first strand
Strand 2	F	334	336	parallel
Strand 3	F	281	282	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	240	241	first strand
Strand 2	F	249	250	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	47	first strand
Strand 2	G	122	127	anti-parallel
Strand 3	G	86	91	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	199	200	first strand
Strand 2	G	252	258	anti-parallel
Strand 3	G	240	246	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8I13

Analysis of interatomic Contacts of Structural Units in PDB entry:
8I13