Analysis of interatomic Contacts of Structural Units in PDB entry:
8I28


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8I28 entry

There are 2 chains in PDB entry 8I28 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 54ALA 395
B
 THR 51ASN 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8I28. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 66Right-handed alpha
Helix 2
AA2
A
79 99Right-handed alpha
Helix 3
AA3
A
111 125Right-handed alpha
Helix 4
AA4
A
135 138Right-handed 310
Helix 5
AA5
A
148 157Right-handed alpha
Helix 6
AA6
A
180 186Right-handed alpha
Helix 7
AA7
A
205 209Right-handed 310
Helix 8
AA8
A
232 240Right-handed alpha
Helix 9
AA9
A
243 250Right-handed alpha
Helix 10
AB1
A
255 258Right-handed 310
Helix 11
AB2
A
259 266Right-handed alpha
Helix 12
AB3
A
276 291Right-handed alpha
Helix 13
AB4
A
292 314Right-handed alpha
Helix 14
AB5
A
324 328Right-handed 310
Helix 15
AB6
A
339 341Right-handed 310
Helix 16
AB7
A
342 352Right-handed alpha
Helix 17
AB8
A
376 388Right-handed alpha
Helix 18
AB9
A
390 394Right-handed alpha
Helix 19
AC1
B
53 65Right-handed alpha
Helix 20
AC2
B
80 99Right-handed alpha
Helix 21
AC3
B
111 124Right-handed alpha
Helix 22
AC4
B
135 138Right-handed 310
Helix 23
AC5
B
147 155Right-handed 310
Helix 24
AC6
B
180 186Right-handed alpha
Helix 25
AC7
B
205 209Right-handed 310
Helix 26
AC8
B
232 240Right-handed alpha
Helix 27
AC9
B
243 249Right-handed alpha
Helix 28
AD1
B
255 258Right-handed 310
Helix 29
AD2
B
259 266Right-handed alpha
Helix 30
AD3
B
278 289Right-handed alpha
Helix 31
AD4
B
292 315Right-handed alpha
Helix 32
AD5
B
324 328Right-handed 310
Helix 33
AD6
B
342 353Right-handed alpha
Helix 34
AD7
B
376 394Right-handed alpha
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There are 6 sheets in PDB entry 8I28. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 77first strand
Strand 2
A
225 231anti-parallel
Strand 3
A
211 214anti-parallel
Strand 4
A
191 194parallel
Strand 5
A
163 166parallel
Strand 6
A
105 109parallel
Strand 7
A
128 133parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
174 175anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 320first strand
Strand 2
A
332 337anti-parallel
Strand 3
A
367 370anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 77first strand
Strand 2
B
225 231anti-parallel
Strand 3
B
211 214anti-parallel
Strand 4
B
191 194parallel
Strand 5
B
163 166parallel
Strand 6
B
105 109parallel
Strand 7
B
128 133parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 169first strand
Strand 2
B
174 175anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
319 320first strand
Strand 2
B
332 337anti-parallel
Strand 3
B
367 370anti-parallel
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