Analysis of interatomic Contacts of Structural Units in PDB entry:
8I39


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8I39 entry

There are 2 chains in PDB entry 8I39 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 36ILE 660
B
 PHE 36ILE 660
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 8I39. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
106 115Right-handed alpha
Helix 2
AA2
A
156 169Right-handed alpha
Helix 3
AA3
A
183 189Right-handed alpha
Helix 4
AA4
A
191 195Right-handed 310
Helix 5
AA5
A
210 219Right-handed alpha
Helix 6
AA6
A
240 255Right-handed alpha
Helix 7
AA7
A
268 274Right-handed alpha
Helix 8
AA8
A
292 300Right-handed alpha
Helix 9
AA9
A
311 322Right-handed alpha
Helix 10
AB1
A
338 344Right-handed alpha
Helix 11
AB2
A
381 397Right-handed alpha
Helix 12
AB3
A
398 403Right-handed 310
Helix 13
AB4
A
411 416Right-handed alpha
Helix 14
AB5
A
416 421Right-handed alpha
Helix 15
AB6
A
432 437Right-handed alpha
Helix 16
AB7
A
438 455Right-handed alpha
Helix 17
AB8
A
459 461Right-handed 310
Helix 18
AB9
A
462 472Right-handed alpha
Helix 19
AC1
A
477 492Right-handed alpha
Helix 20
AC2
A
493 500Right-handed alpha
Helix 21
AC3
A
512 541Right-handed alpha
Helix 22
AC4
A
546 551Right-handed alpha
Helix 23
AC5
A
553 561Right-handed alpha
Helix 24
AC6
A
574 578Right-handed 310
Helix 25
AC7
A
581 594Right-handed alpha
Helix 26
AC8
A
647 658Right-handed alpha
Helix 27
AC9
B
106 115Right-handed alpha
Helix 28
AD1
B
156 169Right-handed alpha
Helix 29
AD2
B
183 189Right-handed alpha
Helix 30
AD3
B
191 195Right-handed 310
Helix 31
AD4
B
210 219Right-handed alpha
Helix 32
AD5
B
240 255Right-handed alpha
Helix 33
AD6
B
268 274Right-handed alpha
Helix 34
AD7
B
292 300Right-handed alpha
Helix 35
AD8
B
311 322Right-handed alpha
Helix 36
AD9
B
338 344Right-handed alpha
Helix 37
AE1
B
381 397Right-handed alpha
Helix 38
AE2
B
398 403Right-handed 310
Helix 39
AE3
B
411 416Right-handed alpha
Helix 40
AE4
B
416 421Right-handed alpha
Helix 41
AE5
B
432 437Right-handed alpha
Helix 42
AE6
B
438 455Right-handed alpha
Helix 43
AE7
B
459 461Right-handed 310
Helix 44
AE8
B
462 472Right-handed alpha
Helix 45
AE9
B
477 492Right-handed alpha
Helix 46
AF1
B
493 500Right-handed alpha
Helix 47
AF2
B
512 541Right-handed alpha
Helix 48
AF3
B
546 551Right-handed alpha
Helix 49
AF4
B
553 561Right-handed alpha
Helix 50
AF5
B
574 578Right-handed 310
Helix 51
AF6
B
581 594Right-handed alpha
Helix 52
AF7
B
647 658Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8I39. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 88first strand
Strand 2
A
43 47anti-parallel
Strand 3
A
123 126anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 145first strand
Strand 2
A
227 231parallel
Strand 3
A
259 263parallel
Strand 4
A
96 100parallel
Strand 5
A
277 280parallel
Strand 6
A
288 291anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 88first strand
Strand 2
B
43 47anti-parallel
Strand 3
B
123 126anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 145first strand
Strand 2
B
227 231parallel
Strand 3
B
259 263parallel
Strand 4
B
96 100parallel
Strand 5
B
277 280parallel
Strand 6
B
288 291anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il