Analysis of interatomic Contacts of Structural Units in PDB entry:
8I3B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8I3B entry

There are 2 chains in PDB entry 8I3B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 35HIS 662
B
 CYS 35HIS 662
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8I3B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
106 115Right-handed alpha
Helix 2
AA2
A
137 140Right-handed 310
Helix 3
AA3
A
156 169Right-handed alpha
Helix 4
AA4
A
174 181Right-handed alpha
Helix 5
AA5
A
185 190Right-handed alpha
Helix 6
AA6
A
210 219Right-handed alpha
Helix 7
AA7
A
241 252Right-handed alpha
Helix 8
AA8
A
297 301Right-handed 310
Helix 9
AA9
A
311 319Right-handed alpha
Helix 10
AB1
A
336 347Right-handed alpha
Helix 11
AB2
A
350 357Right-handed alpha
Helix 12
AB3
A
381 401Right-handed alpha
Helix 13
AB4
A
407 425Right-handed alpha
Helix 14
AB5
A
434 455Right-handed alpha
Helix 15
AB6
A
456 458Right-handed 310
Helix 16
AB7
A
459 461Right-handed 310
Helix 17
AB8
A
462 473Right-handed alpha
Helix 18
AB9
A
476 489Right-handed alpha
Helix 19
AC1
A
493 506Right-handed alpha
Helix 20
AC2
A
512 540Right-handed alpha
Helix 21
AC3
A
543 561Right-handed alpha
Helix 22
AC4
A
575 580Right-handed alpha
Helix 23
AC5
A
581 595Right-handed alpha
Helix 24
AC6
A
598 604Right-handed alpha
Helix 25
AC7
A
639 656Right-handed alpha
Helix 26
AC8
B
106 115Right-handed alpha
Helix 27
AC9
B
137 140Right-handed 310
Helix 28
AD1
B
156 169Right-handed alpha
Helix 29
AD2
B
174 181Right-handed alpha
Helix 30
AD3
B
185 190Right-handed alpha
Helix 31
AD4
B
210 219Right-handed alpha
Helix 32
AD5
B
241 252Right-handed alpha
Helix 33
AD6
B
297 301Right-handed 310
Helix 34
AD7
B
311 319Right-handed alpha
Helix 35
AD8
B
336 347Right-handed alpha
Helix 36
AD9
B
350 357Right-handed alpha
Helix 37
AE1
B
381 401Right-handed alpha
Helix 38
AE2
B
407 425Right-handed alpha
Helix 39
AE3
B
434 455Right-handed alpha
Helix 40
AE4
B
456 458Right-handed 310
Helix 41
AE5
B
459 461Right-handed 310
Helix 42
AE6
B
462 473Right-handed alpha
Helix 43
AE7
B
476 489Right-handed alpha
Helix 44
AE8
B
493 506Right-handed alpha
Helix 45
AE9
B
512 540Right-handed alpha
Helix 46
AF1
B
543 561Right-handed alpha
Helix 47
AF2
B
575 580Right-handed alpha
Helix 48
AF3
B
581 595Right-handed alpha
Helix 49
AF4
B
598 604Right-handed alpha
Helix 50
AF5
B
639 656Right-handed alpha
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There are 6 sheets in PDB entry 8I3B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 91first strand
Strand 2
A
40 50anti-parallel
Strand 3
A
126 129anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 100first strand
Strand 2
A
277 282parallel
Strand 3
A
285 290anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 145first strand
Strand 2
A
227 230parallel
Strand 3
A
259 262parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 91first strand
Strand 2
B
40 50anti-parallel
Strand 3
B
126 129anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 100first strand
Strand 2
B
277 282parallel
Strand 3
B
285 290anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 145first strand
Strand 2
B
227 230parallel
Strand 3
B
259 262parallel
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