Analysis of interatomic Contacts of Structural Units in PDB entry:
8I3D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8I3D entry

There are 2 chains in PDB entry 8I3D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 31HIS 662
B
 LEU 31HIS 662
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 54 helices in PDB entry 8I3D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
106 116Right-handed alpha
Helix 2
AA2
A
156 169Right-handed alpha
Helix 3
AA3
A
174 181Right-handed alpha
Helix 4
AA4
A
182 187Right-handed alpha
Helix 5
AA5
A
208 221Right-handed alpha
Helix 6
AA6
A
240 255Right-handed alpha
Helix 7
AA7
A
271 275Right-handed 310
Helix 8
AA8
A
294 301Right-handed alpha
Helix 9
AA9
A
311 322Right-handed alpha
Helix 10
AB1
A
338 349Right-handed alpha
Helix 11
AB2
A
349 360Right-handed alpha
Helix 12
AB3
A
378 401Right-handed alpha
Helix 13
AB4
A
401 406Right-handed alpha
Helix 14
AB5
A
407 425Right-handed alpha
Helix 15
AB6
A
432 455Right-handed alpha
Helix 16
AB7
A
457 462Right-handed alpha
Helix 17
AB8
A
462 472Right-handed alpha
Helix 18
AB9
A
477 486Right-handed alpha
Helix 19
AC1
A
487 492Right-handed alpha
Helix 20
AC2
A
493 503Right-handed alpha
Helix 21
AC3
A
512 541Right-handed alpha
Helix 22
AC4
A
545 561Right-handed alpha
Helix 23
AC5
A
570 574Right-handed 310
Helix 24
AC6
A
575 579Right-handed 310
Helix 25
AC7
A
580 595Right-handed alpha
Helix 26
AC8
A
622 626Right-handed 310
Helix 27
AC9
A
634 659Right-handed alpha
Helix 28
AD1
B
106 116Right-handed alpha
Helix 29
AD2
B
156 169Right-handed alpha
Helix 30
AD3
B
174 181Right-handed alpha
Helix 31
AD4
B
182 187Right-handed alpha
Helix 32
AD5
B
208 221Right-handed alpha
Helix 33
AD6
B
240 255Right-handed alpha
Helix 34
AD7
B
271 275Right-handed 310
Helix 35
AD8
B
294 301Right-handed alpha
Helix 36
AD9
B
311 322Right-handed alpha
Helix 37
AE1
B
338 349Right-handed alpha
Helix 38
AE2
B
349 360Right-handed alpha
Helix 39
AE3
B
378 401Right-handed alpha
Helix 40
AE4
B
401 406Right-handed alpha
Helix 41
AE5
B
407 425Right-handed alpha
Helix 42
AE6
B
432 455Right-handed alpha
Helix 43
AE7
B
457 462Right-handed alpha
Helix 44
AE8
B
462 472Right-handed alpha
Helix 45
AE9
B
477 486Right-handed alpha
Helix 46
AF1
B
487 492Right-handed alpha
Helix 47
AF2
B
493 503Right-handed alpha
Helix 48
AF3
B
512 541Right-handed alpha
Helix 49
AF4
B
545 561Right-handed alpha
Helix 50
AF5
B
570 574Right-handed 310
Helix 51
AF6
B
575 579Right-handed 310
Helix 52
AF7
B
580 595Right-handed alpha
Helix 53
AF8
B
622 626Right-handed 310
Helix 54
AF9
B
634 659Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8I3D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 91first strand
Strand 2
A
40 49anti-parallel
Strand 3
A
123 129anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 145first strand
Strand 2
A
227 231parallel
Strand 3
A
259 263parallel
Strand 4
A
95 100parallel
Strand 5
A
277 280parallel
Strand 6
A
288 291anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 91first strand
Strand 2
B
40 49anti-parallel
Strand 3
B
123 129anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 145first strand
Strand 2
B
227 231parallel
Strand 3
B
259 263parallel
Strand 4
B
95 100parallel
Strand 5
B
277 280parallel
Strand 6
B
288 291anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il