Analysis of interatomic Contacts of Structural Units in PDB entry:
8I3F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8I3F entry

There are 3 chains in PDB entry 8I3F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 218GLY 400
B
 GLU 258GLU 375
C
 ALA 1THR 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8I3F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
225 241Right-handed alpha
Helix 2
AA2
A
253 268Right-handed alpha
Helix 3
AA3
A
271 297Right-handed alpha
Helix 4
AA4
A
299 301Right-handed 310
Helix 5
AA5
A
302 316Right-handed alpha
Helix 6
AA6
A
321 325Right-handed 310
Helix 7
AA7
A
327 344Right-handed alpha
Helix 8
AA8
A
348 369Right-handed alpha
Helix 9
AA9
A
369 375Right-handed alpha
Helix 10
AB1
A
391 400Right-handed alpha
Helix 11
AB2
B
285 287Right-handed 310
Helix 12
AB3
B
303 314Right-handed alpha
Helix 13
AB4
B
318 330Right-handed alpha
Helix 14
AB5
B
331 335Right-handed 310
Helix 15
AB6
B
336 343Right-handed alpha
Helix 16
AB7
B
344 346Right-handed 310
Helix 17
AB8
B
354 359Right-handed alpha
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There are 3 sheets in PDB entry 8I3F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 246first strand
Strand 2
A
387 389anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 283first strand
Strand 2
B
270 274anti-parallel
Strand 3
C
2 6anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
365 366first strand
Strand 2
B
372 373anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il