Analysis of interatomic Contacts of Structural Units in PDB entry:
8I3I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8I3I entry

There are 4 chains in PDB entry 8I3I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 4	LEU 533
D	TYR 4	LEU 533
B	TYR 4	LEU 533
C	TYR 4	LEU 533

There are 84 helices in PDB entry 8I3I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	21	Right-handed alpha
Helix 2	AA2	A	41	58	Right-handed alpha
Helix 3	AA3	A	73	87	Right-handed alpha
Helix 4	AA4	A	98	110	Right-handed alpha
Helix 5	AA5	A	120	127	Right-handed alpha
Helix 6	AA6	A	146	153	Right-handed alpha
Helix 7	AA7	A	189	205	Right-handed alpha
Helix 8	AA8	A	227	230	Right-handed 310
Helix 9	AA9	A	231	240	Right-handed alpha
Helix 10	AB1	A	250	261	Right-handed alpha
Helix 11	AB2	A	269	279	Right-handed alpha
Helix 12	AB3	A	280	285	Right-handed 310
Helix 13	AB4	A	300	310	Right-handed alpha
Helix 14	AB5	A	340	350	Right-handed alpha
Helix 15	AB6	A	364	368	Right-handed 310
Helix 16	AB7	A	395	402	Right-handed alpha
Helix 17	AB8	A	403	406	Right-handed 310
Helix 18	AB9	A	428	430	Right-handed 310
Helix 19	AC1	A	439	449	Right-handed alpha
Helix 20	AC2	A	481	492	Right-handed alpha
Helix 21	AC3	A	524	532	Right-handed alpha
Helix 22	AC4	D	14	21	Right-handed alpha
Helix 23	AC5	D	41	58	Right-handed alpha
Helix 24	AC6	D	73	87	Right-handed alpha
Helix 25	AC7	D	98	110	Right-handed alpha
Helix 26	AC8	D	120	127	Right-handed alpha
Helix 27	AC9	D	146	153	Right-handed alpha
Helix 28	AD1	D	189	205	Right-handed alpha
Helix 29	AD2	D	227	230	Right-handed 310
Helix 30	AD3	D	231	240	Right-handed alpha
Helix 31	AD4	D	250	261	Right-handed alpha
Helix 32	AD5	D	269	279	Right-handed alpha
Helix 33	AD6	D	280	285	Right-handed 310
Helix 34	AD7	D	300	310	Right-handed alpha
Helix 35	AD8	D	340	350	Right-handed alpha
Helix 36	AD9	D	364	368	Right-handed 310
Helix 37	AE1	D	395	402	Right-handed alpha
Helix 38	AE2	D	403	406	Right-handed 310
Helix 39	AE3	D	428	430	Right-handed 310
Helix 40	AE4	D	439	449	Right-handed alpha
Helix 41	AE5	D	481	492	Right-handed alpha
Helix 42	AE6	D	524	532	Right-handed alpha
Helix 43	AE7	B	14	21	Right-handed alpha
Helix 44	AE8	B	41	58	Right-handed alpha
Helix 45	AE9	B	73	87	Right-handed alpha
Helix 46	AF1	B	98	110	Right-handed alpha
Helix 47	AF2	B	120	127	Right-handed alpha
Helix 48	AF3	B	146	153	Right-handed alpha
Helix 49	AF4	B	189	205	Right-handed alpha
Helix 50	AF5	B	227	230	Right-handed 310
Helix 51	AF6	B	231	240	Right-handed alpha
Helix 52	AF7	B	250	261	Right-handed alpha
Helix 53	AF8	B	269	279	Right-handed alpha
Helix 54	AF9	B	280	285	Right-handed 310
Helix 55	AG1	B	300	310	Right-handed alpha
Helix 56	AG2	B	340	350	Right-handed alpha
Helix 57	AG3	B	364	368	Right-handed 310
Helix 58	AG4	B	395	402	Right-handed alpha
Helix 59	AG5	B	403	406	Right-handed 310
Helix 60	AG6	B	428	430	Right-handed 310
Helix 61	AG7	B	439	449	Right-handed alpha
Helix 62	AG8	B	481	492	Right-handed alpha
Helix 63	AG9	B	524	532	Right-handed alpha
Helix 64	AH1	C	14	21	Right-handed alpha
Helix 65	AH2	C	41	58	Right-handed alpha
Helix 66	AH3	C	73	87	Right-handed alpha
Helix 67	AH4	C	98	110	Right-handed alpha
Helix 68	AH5	C	120	127	Right-handed alpha
Helix 69	AH6	C	146	153	Right-handed alpha
Helix 70	AH7	C	189	205	Right-handed alpha
Helix 71	AH8	C	227	230	Right-handed 310
Helix 72	AH9	C	231	240	Right-handed alpha
Helix 73	AI1	C	250	261	Right-handed alpha
Helix 74	AI2	C	269	279	Right-handed alpha
Helix 75	AI3	C	280	285	Right-handed 310
Helix 76	AI4	C	300	310	Right-handed alpha
Helix 77	AI5	C	340	350	Right-handed alpha
Helix 78	AI6	C	364	368	Right-handed 310
Helix 79	AI7	C	395	402	Right-handed alpha
Helix 80	AI8	C	403	406	Right-handed 310
Helix 81	AI9	C	428	430	Right-handed 310
Helix 82	AJ1	C	439	449	Right-handed alpha
Helix 83	AJ2	C	481	492	Right-handed alpha
Helix 84	AJ3	C	524	532	Right-handed alpha

There are 24 sheets in PDB entry 8I3I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	30	33	anti-parallel
Strand 3	A	242	245	parallel
Strand 4	A	217	220	parallel
Strand 5	A	265	268	parallel
Strand 6	A	291	294	parallel
Strand 7	A	313	319	parallel
Strand 8	A	326	329	anti-parallel
Strand 9	A	353	354	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	140	first strand
Strand 2	A	113	117	parallel
Strand 3	A	65	69	parallel
Strand 4	A	89	92	parallel
Strand 5	A	169	174	parallel
Strand 6	A	184	188	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	363	first strand
Strand 2	A	378	382	anti-parallel
Strand 3	A	407	415	anti-parallel
Strand 4	A	421	426	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	432	first strand
Strand 2	A	437	438	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	458	first strand
Strand 2	A	471	476	anti-parallel
Strand 3	A	508	511	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	462	first strand
Strand 2	A	468	469	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	40	first strand
Strand 2	D	30	33	anti-parallel
Strand 3	D	242	245	parallel
Strand 4	D	217	220	parallel
Strand 5	D	265	268	parallel
Strand 6	D	291	294	parallel
Strand 7	D	313	319	parallel
Strand 8	D	326	329	anti-parallel
Strand 9	D	353	354	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	140	first strand
Strand 2	D	113	117	parallel
Strand 3	D	65	69	parallel
Strand 4	D	89	92	parallel
Strand 5	D	169	174	parallel
Strand 6	D	184	188	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	361	363	first strand
Strand 2	D	378	382	anti-parallel
Strand 3	D	407	415	anti-parallel
Strand 4	D	421	426	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	431	432	first strand
Strand 2	D	437	438	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	453	458	first strand
Strand 2	D	471	476	anti-parallel
Strand 3	D	508	511	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	461	462	first strand
Strand 2	D	468	469	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	30	33	anti-parallel
Strand 3	B	242	245	parallel
Strand 4	B	217	220	parallel
Strand 5	B	265	268	parallel
Strand 6	B	291	294	parallel
Strand 7	B	313	319	parallel
Strand 8	B	326	329	anti-parallel
Strand 9	B	353	354	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	140	first strand
Strand 2	B	113	117	parallel
Strand 3	B	65	69	parallel
Strand 4	B	89	92	parallel
Strand 5	B	169	174	parallel
Strand 6	B	184	188	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	363	first strand
Strand 2	B	378	382	anti-parallel
Strand 3	B	407	415	anti-parallel
Strand 4	B	421	426	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	432	first strand
Strand 2	B	437	438	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	458	first strand
Strand 2	B	471	476	anti-parallel
Strand 3	B	508	511	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	461	462	first strand
Strand 2	B	468	469	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	40	first strand
Strand 2	C	30	33	anti-parallel
Strand 3	C	242	245	parallel
Strand 4	C	217	220	parallel
Strand 5	C	265	268	parallel
Strand 6	C	291	294	parallel
Strand 7	C	313	319	parallel
Strand 8	C	326	329	anti-parallel
Strand 9	C	353	354	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	140	first strand
Strand 2	C	113	117	parallel
Strand 3	C	65	69	parallel
Strand 4	C	89	92	parallel
Strand 5	C	169	174	parallel
Strand 6	C	184	188	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	363	first strand
Strand 2	C	378	382	anti-parallel
Strand 3	C	407	415	anti-parallel
Strand 4	C	421	426	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	431	432	first strand
Strand 2	C	437	438	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	458	first strand
Strand 2	C	471	476	anti-parallel
Strand 3	C	508	511	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	461	462	first strand
Strand 2	C	468	469	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8I3I

Analysis of interatomic Contacts of Structural Units in PDB entry:
8I3I