Analysis of interatomic Contacts of Structural Units in PDB entry:
8I5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8I5D entry

There are 5 chains in PDB entry 8I5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8PRO 201
B
 GLY 3ALA 244
H
 GLY 1TRP 274
L
 ILE 1MET 99
P
 VAL 1LYS 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 8I5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 84Right-handed 310
Helix 2
AA2
A
182 187Right-handed alpha
Helix 3
AA3
B
83 87Right-handed 310
Helix 4
AA4
B
96 99Right-handed 310
Helix 5
AA5
B
117 121Right-handed 310
Helix 6
AA6
B
132 139Right-handed alpha
Helix 7
AA7
B
199 204Right-handed alpha
Helix 8
AA8
H
49 53Right-handed 310
Helix 9
AA9
H
56 85Right-handed alpha
Helix 10
AB1
H
137 150Right-handed alpha
Helix 11
AB2
H
151 162Right-handed alpha
Helix 12
AB3
H
162 175Right-handed alpha
Helix 13
AB4
H
175 180Right-handed alpha
Back to top of page

There are 17 sheets in PDB entry 8I5D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
104 109parallel
Strand 3
A
85 92anti-parallel
Strand 4
A
31 37anti-parallel
Strand 5
A
44 50anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
104 109parallel
Strand 3
A
85 92anti-parallel
Strand 4
A
99 100anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 24first strand
Strand 2
A
71 76anti-parallel
Strand 3
A
61 66anti-parallel
Strand 4
A
55 58anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
171 175anti-parallel
Strand 3
A
131 136anti-parallel
Strand 4
A
118 124anti-parallel
Strand 5
B
125 130anti-parallel
Strand 6
B
141 151anti-parallel
Strand 7
B
189 198anti-parallel
Strand 8
B
171 173anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
171 175anti-parallel
Strand 3
A
131 136anti-parallel
Strand 4
A
118 124anti-parallel
Strand 5
B
125 130anti-parallel
Strand 6
B
141 151anti-parallel
Strand 7
B
189 198anti-parallel
Strand 8
B
178 179anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
167 169anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
19 24anti-parallel
Strand 3
B
74 79anti-parallel
Strand 4
B
65 71anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
110 115parallel
Strand 3
B
88 95anti-parallel
Strand 4
B
31 37anti-parallel
Strand 5
B
44 50anti-parallel
Strand 6
B
53 56anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
110 115parallel
Strand 3
B
88 95anti-parallel
Strand 4
B
105 106anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 167first strand
Strand 2
B
156 162anti-parallel
Strand 3
B
208 215anti-parallel
Strand 4
B
234 241anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
46 47first strand
Strand 2
H
31 37anti-parallel
Strand 3
H
21 28anti-parallel
Strand 4
H
3 12anti-parallel
Strand 5
H
94 103anti-parallel
Strand 6
H
109 118anti-parallel
Strand 7
H
121 126anti-parallel
Strand 8
H
133 135anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
186 192first strand
Strand 2
H
198 208anti-parallel
Strand 3
H
241 250anti-parallel
Strand 4
H
228 230anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
186 192first strand
Strand 2
H
198 208anti-parallel
Strand 3
H
241 250anti-parallel
Strand 4
H
234 235anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
222 223first strand
Strand 2
H
214 219anti-parallel
Strand 3
H
257 262anti-parallel
Strand 4
H
270 273anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
6 11first strand
Strand 2
L
21 30anti-parallel
Strand 3
L
62 70anti-parallel
Strand 4
L
50 51anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
6 11first strand
Strand 2
L
21 30anti-parallel
Strand 3
L
62 70anti-parallel
Strand 4
L
55 56anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
44 45first strand
Strand 2
L
36 41anti-parallel
Strand 3
L
78 83anti-parallel
Strand 4
L
91 94anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il