Analysis of interatomic Contacts of Structural Units in PDB entry:
8I5F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8I5F entry

There are 4 chains in PDB entry 8I5F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1678THR 2150
C
 MET 1GLU 178
B
 PRO 1678THR 2150
D
 MET 1LEU 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8I5F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1679 1691Right-handed alpha
Helix 2
AA2
A
1695 1714Right-handed alpha
Helix 3
AA3
A
1715 1738Right-handed alpha
Helix 4
AA4
A
1772 1776Right-handed 310
Helix 5
AA5
A
1777 1781Right-handed 310
Helix 6
AA6
A
1784 1792Right-handed 310
Helix 7
AA7
A
1805 1823Right-handed alpha
Helix 8
AA8
A
1825 1827Right-handed 310
Helix 9
AA9
A
1828 1843Right-handed alpha
Helix 10
AB1
A
1845 1867Right-handed alpha
Helix 11
AB2
A
1905 1922Right-handed alpha
Helix 12
AB3
A
1936 1940Right-handed 310
Helix 13
AB4
A
1957 1964Right-handed alpha
Helix 14
AB5
A
1966 1972Right-handed alpha
Helix 15
AB6
A
2027 2049Right-handed alpha
Helix 16
AB7
A
2053 2066Right-handed alpha
Helix 17
AB8
A
2072 2082Right-handed alpha
Helix 18
AB9
A
2082 2089Right-handed alpha
Helix 19
AC1
A
2090 2119Right-handed alpha
Helix 20
AC2
A
2123 2146Right-handed alpha
Helix 21
AC3
C
15 26Right-handed alpha
Helix 22
AC4
C
28 32Right-handed 310
Helix 23
AC5
C
67 72Right-handed 310
Helix 24
AC6
C
86 96Right-handed alpha
Helix 25
AC7
C
96 105Right-handed alpha
Helix 26
AC8
C
118 121Right-handed 310
Helix 27
AC9
C
122 132Right-handed alpha
Helix 28
AD1
C
138 149Right-handed alpha
Helix 29
AD2
C
164 177Right-handed alpha
Helix 30
AD3
B
1679 1691Right-handed alpha
Helix 31
AD4
B
1695 1713Right-handed alpha
Helix 32
AD5
B
1715 1737Right-handed alpha
Helix 33
AD6
B
1772 1781Right-handed 310
Helix 34
AD7
B
1784 1793Right-handed 310
Helix 35
AD8
B
1805 1823Right-handed alpha
Helix 36
AD9
B
1825 1827Right-handed 310
Helix 37
AE1
B
1828 1843Right-handed alpha
Helix 38
AE2
B
1845 1867Right-handed alpha
Helix 39
AE3
B
1905 1922Right-handed alpha
Helix 40
AE4
B
1936 1940Right-handed 310
Helix 41
AE5
B
1957 1964Right-handed alpha
Helix 42
AE6
B
1966 1972Right-handed alpha
Helix 43
AE7
B
2027 2049Right-handed alpha
Helix 44
AE8
B
2053 2066Right-handed alpha
Helix 45
AE9
B
2072 2081Right-handed alpha
Helix 46
AF1
B
2082 2089Right-handed alpha
Helix 47
AF2
B
2090 2119Right-handed alpha
Helix 48
AF3
B
2123 2146Right-handed alpha
Helix 49
AF4
D
15 25Right-handed alpha
Helix 50
AF5
D
28 32Right-handed 310
Helix 51
AF6
D
61 72Right-handed 310
Helix 52
AF7
D
86 96Right-handed alpha
Helix 53
AF8
D
96 105Right-handed alpha
Helix 54
AF9
D
116 122Right-handed alpha
Helix 55
AG1
D
122 131Right-handed alpha
Helix 56
AG2
D
138 147Right-handed alpha
Helix 57
AG3
D
164 176Right-handed alpha
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There are 4 sheets in PDB entry 8I5F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1926 1929first strand
Strand 2
A
1945 1954parallel
Strand 3
A
1974 1984anti-parallel
Strand 4
A
1996 2009anti-parallel
Strand 5
A
2015 2026anti-parallel
Strand 6
A
1895 1900anti-parallel
Strand 7
A
1876 1883anti-parallel
Strand 8
A
1945 1954anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 46first strand
Strand 2
C
49 57anti-parallel
Strand 3
C
4 10parallel
Strand 4
C
77 83parallel
Strand 5
C
110 115parallel
Strand 6
C
154 156parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1926 1929first strand
Strand 2
B
1945 1954parallel
Strand 3
B
1974 1984anti-parallel
Strand 4
B
1996 2009anti-parallel
Strand 5
B
2015 2026anti-parallel
Strand 6
B
1895 1900anti-parallel
Strand 7
B
1876 1883anti-parallel
Strand 8
B
1945 1954anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
40 46first strand
Strand 2
D
49 57anti-parallel
Strand 3
D
3 10parallel
Strand 4
D
77 83parallel
Strand 5
D
110 115parallel
Strand 6
D
154 156parallel
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