Analysis of interatomic Contacts of Structural Units in PDB entry:
8I5K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8I5K entry

There is 1 chain in PDB entry 8I5K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 1VAL 528
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8I5K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
82 96Right-handed alpha
Helix 2
AA2
A
97 100Right-handed 310
Helix 3
AA3
A
129 136Right-handed alpha
Helix 4
AA4
A
141 146Right-handed alpha
Helix 5
AA5
A
186 190Right-handed 310
Helix 6
AA6
A
202 212Right-handed alpha
Helix 7
AA7
A
224 229Right-handed alpha
Helix 8
AA8
A
230 233Right-handed 310
Helix 9
AA9
A
256 264Right-handed alpha
Helix 10
AB1
A
265 276Right-handed alpha
Helix 11
AB2
A
277 286Right-handed alpha
Helix 12
AB3
A
300 307Right-handed 310
Helix 13
AB4
A
308 317Right-handed alpha
Helix 14
AB5
A
318 320Right-handed 310
Helix 15
AB6
A
322 333Right-handed alpha
Helix 16
AB7
A
362 379Right-handed alpha
Helix 17
AB8
A
389 399Right-handed alpha
Helix 18
AB9
A
415 424Right-handed alpha
Helix 19
AC1
A
425 429Right-handed 310
Helix 20
AC2
A
443 453Right-handed alpha
Helix 21
AC3
A
458 476Right-handed alpha
Helix 22
AC4
A
516 523Right-handed alpha
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There are 5 sheets in PDB entry 8I5K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 172first strand
Strand 2
A
175 180anti-parallel
Strand 3
A
194 198anti-parallel
Strand 4
A
3 7parallel
Strand 5
A
217 218parallel
Strand 6
A
490 492anti-parallel
Strand 7
A
236 238anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
47 50anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 58first strand
Strand 2
A
64 69anti-parallel
Strand 3
A
118 123anti-parallel
Strand 4
A
108 115anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
480 486anti-parallel
Strand 3
A
242 250anti-parallel
Strand 4
A
404 408anti-parallel
Strand 5
A
354 357parallel
Strand 6
A
383 386parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 497first strand
Strand 2
A
526 527anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il