Analysis of interatomic Contacts of Structural Units in PDB entry:
8I5Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8I5Y entry

There are 3 chains in PDB entry 8I5Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 8GLU 1768
B
 GLY 20ALA 192
C
 MET 30MET 148
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 8I5Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 34Right-handed alpha
Helix 2
AA2
A
60 64Right-handed 310
Helix 3
AA3
A
67 71Right-handed 310
Helix 4
AA4
A
79 84Right-handed alpha
Helix 5
AA5
A
104 108Right-handed 310
Helix 6
AA6
A
113 124Right-handed alpha
Helix 7
AA7
A
125 143Right-handed alpha
Helix 8
AA8
A
151 175Right-handed alpha
Helix 9
AA9
A
186 204Right-handed alpha
Helix 10
AB1
A
210 218Right-handed alpha
Helix 11
AB2
A
219 222Right-handed 310
Helix 12
AB3
A
223 228Right-handed alpha
Helix 13
AB4
A
230 244Right-handed alpha
Helix 14
AB5
A
245 268Right-handed alpha
Helix 15
AB6
A
269 271Right-handed 310
Helix 16
AB7
A
285 291Right-handed alpha
Helix 17
AB8
A
295 300Right-handed alpha
Helix 18
AB9
A
346 360Right-handed alpha
Helix 19
AC1
A
362 375Right-handed alpha
Helix 20
AC2
A
378 389Right-handed alpha
Helix 21
AC3
A
391 418Right-handed alpha
Helix 22
AC4
A
729 741Right-handed alpha
Helix 23
AC5
A
742 762Right-handed alpha
Helix 24
AC6
A
769 798Right-handed alpha
Helix 25
AC7
A
799 804Right-handed alpha
Helix 26
AC8
A
806 825Right-handed alpha
Helix 27
AC9
A
833 848Right-handed 310
Helix 28
AD1
A
849 863Right-handed alpha
Helix 29
AD2
A
866 895Right-handed alpha
Helix 30
AD3
A
896 899Right-handed 310
Helix 31
AD4
A
912 926Right-handed alpha
Helix 32
AD5
A
928 940Right-handed alpha
Helix 33
AD6
A
940 973Right-handed alpha
Helix 34
AD7
A
986 1014Right-handed alpha
Helix 35
AD8
A
1176 1191Right-handed alpha
Helix 36
AD9
A
1191 1208Right-handed alpha
Helix 37
AE1
A
1219 1249Right-handed alpha
Helix 38
AE2
A
1249 1255Right-handed alpha
Helix 39
AE3
A
1256 1279Right-handed alpha
Helix 40
AE4
A
1283 1291Right-handed alpha
Helix 41
AE5
A
1292 1301Right-handed 310
Helix 42
AE6
A
1304 1344Right-handed alpha
Helix 43
AE7
A
1366 1377Right-handed alpha
Helix 44
AE8
A
1391 1404Right-handed alpha
Helix 45
AE9
A
1407 1417Right-handed alpha
Helix 46
AF1
A
1430 1432Right-handed 310
Helix 47
AF2
A
1433 1467Right-handed alpha
Helix 48
AF3
A
1475 1490Right-handed alpha
Helix 49
AF4
A
1502 1513Right-handed alpha
Helix 50
AF5
A
1514 1535Right-handed alpha
Helix 51
AF6
A
1540 1570Right-handed alpha
Helix 52
AF7
A
1571 1575Right-handed 310
Helix 53
AF8
A
1576 1603Right-handed alpha
Helix 54
AF9
A
1605 1614Right-handed alpha
Helix 55
AG1
A
1617 1622Right-handed alpha
Helix 56
AG2
A
1622 1627Right-handed alpha
Helix 57
AG3
A
1628 1666Right-handed alpha
Helix 58
AG4
A
1683 1696Right-handed alpha
Helix 59
AG5
A
1699 1705Right-handed alpha
Helix 60
AG6
A
1706 1709Right-handed 310
Helix 61
AG7
A
1732 1767Right-handed alpha
Helix 62
AG8
B
83 87Right-handed 310
Helix 63
AG9
B
112 115Right-handed 310
Helix 64
AH1
B
153 192Right-handed alpha
Helix 65
AH2
C
118 122Right-handed 310
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There are 10 sheets in PDB entry 8I5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
87 91anti-parallel
Strand 3
A
97 101anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 277first strand
Strand 2
A
328 332anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1357 1358first strand
Strand 2
A
1349 1352anti-parallel
Strand 3
A
1380 1383anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
138 147parallel
Strand 3
B
117 129anti-parallel
Strand 4
B
50 61anti-parallel
Strand 5
B
68 74anti-parallel
Strand 6
B
77 80anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
138 147parallel
Strand 3
B
117 129anti-parallel
Strand 4
B
132 135anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
106 108anti-parallel
Strand 3
B
90 92anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 33first strand
Strand 2
C
51 53anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 41first strand
Strand 2
C
142 147parallel
Strand 3
C
123 130anti-parallel
Strand 4
C
64 70anti-parallel
Strand 5
C
77 83anti-parallel
Strand 6
C
87 89anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 41first strand
Strand 2
C
142 147parallel
Strand 3
C
123 130anti-parallel
Strand 4
C
138 139anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 48first strand
Strand 2
C
112 114anti-parallel
Strand 3
C
99 101anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il