Analysis of interatomic Contacts of Structural Units in PDB entry:
8I6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8I6J entry

There are 2 chains in PDB entry 8I6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Q
 PHE 63ARG 232
C
 ARG 20ILE 519
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8I6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
Q
65 81Right-handed alpha
Helix 2
AA2
Q
82 84Right-handed 310
Helix 3
AA3
Q
128 141Right-handed alpha
Helix 4
AA4
Q
180 185Right-handed alpha
Helix 5
AA5
Q
190 200Right-handed alpha
Helix 6
AA6
Q
218 231Right-handed alpha
Helix 7
AA7
C
21 37Right-handed alpha
Helix 8
AA8
C
62 70Right-handed alpha
Helix 9
AA9
C
74 91Right-handed alpha
Helix 10
AB1
C
95 108Right-handed alpha
Helix 11
AB2
C
109 116Right-handed alpha
Helix 12
AB3
C
118 140Right-handed alpha
Helix 13
AB4
C
149 160Right-handed alpha
Helix 14
AB5
C
168 184Right-handed alpha
Helix 15
AB6
C
208 212Right-handed 310
Helix 16
AB7
C
249 253Right-handed 310
Helix 17
AB8
C
260 284Right-handed alpha
Helix 18
AB9
C
297 307Right-handed alpha
Helix 19
AC1
C
316 324Right-handed alpha
Helix 20
AC2
C
381 404Right-handed alpha
Helix 21
AC3
C
412 430Right-handed alpha
Helix 22
AC4
C
433 442Right-handed alpha
Helix 23
AC5
C
445 456Right-handed alpha
Helix 24
AC6
C
458 473Right-handed alpha
Helix 25
AC7
C
499 519Right-handed alpha
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There are 6 sheets in PDB entry 8I6J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
145 146first strand
Strand 2
Q
115 119parallel
Strand 3
Q
165 168anti-parallel
Strand 4
Q
175 178anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 51first strand
Strand 2
C
57 60anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
142 143first strand
Strand 2
C
406 409anti-parallel
Strand 3
C
496 498anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
201 205first strand
Strand 2
C
373 378parallel
Strand 3
C
213 215anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
218 220first strand
Strand 2
C
360 364anti-parallel
Strand 3
C
349 353anti-parallel
Strand 4
C
233 234anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 240first strand
Strand 2
C
289 291parallel
Strand 3
C
310 312parallel
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