Analysis of interatomic Contacts of Structural Units in PDB entry:
8I6S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8I6S entry

There are 5 chains in PDB entry 8I6S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 35ARG 335
B
 MET 1GLU 222
C
 SER 33ARG 335
D
 MET 1GLU 222
E
 ASP 89VAL 165
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8I6S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 54Right-handed alpha
Helix 2
AA2
A
55 69Right-handed alpha
Helix 3
AA3
A
70 81Right-handed alpha
Helix 4
AA4
A
105 117Right-handed alpha
Helix 5
AA5
A
129 142Right-handed alpha
Helix 6
AA6
A
171 178Right-handed alpha
Helix 7
AA7
A
194 231Right-handed alpha
Helix 8
AA8
A
234 244Right-handed alpha
Helix 9
AA9
A
247 293Right-handed alpha
Helix 10
AB1
A
302 332Right-handed alpha
Helix 11
AB2
B
40 49Right-handed alpha
Helix 12
AB3
B
73 80Right-handed alpha
Helix 13
AB4
B
95 101Right-handed alpha
Helix 14
AB5
B
110 112Right-handed 310
Helix 15
AB6
B
113 125Right-handed alpha
Helix 16
AB7
B
134 138Right-handed 310
Helix 17
AB8
B
139 153Right-handed alpha
Helix 18
AB9
B
169 186Right-handed alpha
Helix 19
AC1
B
198 202Right-handed 310
Helix 20
AC2
C
34 54Right-handed alpha
Helix 21
AC3
C
55 69Right-handed alpha
Helix 22
AC4
C
70 84Right-handed alpha
Helix 23
AC5
C
89 93Right-handed 310
Helix 24
AC6
C
106 119Right-handed alpha
Helix 25
AC7
C
129 139Right-handed alpha
Helix 26
AC8
C
170 173Right-handed 310
Helix 27
AC9
C
174 179Right-handed alpha
Helix 28
AD1
C
191 196Right-handed alpha
Helix 29
AD2
C
196 201Right-handed alpha
Helix 30
AD3
C
202 233Right-handed alpha
Helix 31
AD4
C
235 243Right-handed alpha
Helix 32
AD5
C
247 292Right-handed alpha
Helix 33
AD6
C
303 332Right-handed alpha
Helix 34
AD7
D
41 50Right-handed alpha
Helix 35
AD8
D
73 80Right-handed alpha
Helix 36
AD9
D
96 101Right-handed alpha
Helix 37
AE1
D
101 108Right-handed alpha
Helix 38
AE2
D
110 112Right-handed 310
Helix 39
AE3
D
113 122Right-handed alpha
Helix 40
AE4
D
141 153Right-handed alpha
Helix 41
AE5
D
169 183Right-handed alpha
Helix 42
AE6
E
92 114Right-handed alpha
Helix 43
AE7
E
136 163Right-handed alpha
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There are 9 sheets in PDB entry 8I6S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
159 162anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 25first strand
Strand 2
B
2 8anti-parallel
Strand 3
B
56 57anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
207 208parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
64 66anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
189 190parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 128first strand
Strand 2
C
158 160anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 5first strand
Strand 2
D
58 61anti-parallel
Strand 3
D
64 65anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
190 193first strand
Strand 2
D
30 35parallel
Strand 3
D
208 210parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
81 82first strand
Strand 2
D
158 159parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il