Analysis of interatomic Contacts of Structural Units in PDB entry:
8I6V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8I6V entry

There are 5 chains in PDB entry 8I6V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 21	TYR 122
B	GLU 22	TYR 122
C	ARG 20	LYS 121
D	MET 1	GLU 835
E	MET 1	ALA 720

There are 56 helices in PDB entry 8I6V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	53	Right-handed alpha
Helix 2	AA2	A	55	84	Right-handed alpha
Helix 3	AA3	A	99	122	Right-handed alpha
Helix 4	AA4	B	23	52	Right-handed alpha
Helix 5	AA5	B	55	87	Right-handed alpha
Helix 6	AA6	B	99	122	Right-handed alpha
Helix 7	AA7	C	22	53	Right-handed alpha
Helix 8	AA8	C	55	89	Right-handed alpha
Helix 9	AA9	C	98	121	Right-handed alpha
Helix 10	AB1	D	2	10	Right-handed alpha
Helix 11	AB2	D	11	16	Right-handed 310
Helix 12	AB3	D	21	29	Right-handed alpha
Helix 13	AB4	D	30	36	Right-handed alpha
Helix 14	AB5	D	45	87	Right-handed alpha
Helix 15	AB6	D	95	134	Right-handed alpha
Helix 16	AB7	D	141	151	Right-handed alpha
Helix 17	AB8	D	161	177	Right-handed alpha
Helix 18	AB9	D	187	195	Right-handed 310
Helix 19	AC1	D	216	226	Right-handed alpha
Helix 20	AC2	D	306	314	Right-handed alpha
Helix 21	AC3	D	329	333	Right-handed 310
Helix 22	AC4	D	365	371	Right-handed alpha
Helix 23	AC5	D	375	389	Right-handed alpha
Helix 24	AC6	D	391	413	Right-handed alpha
Helix 25	AC7	D	474	479	Right-handed 310
Helix 26	AC8	D	507	515	Right-handed alpha
Helix 27	AC9	D	526	537	Right-handed alpha
Helix 28	AD1	D	550	554	Right-handed 310
Helix 29	AD2	D	560	587	Right-handed alpha
Helix 30	AD3	D	696	726	Right-handed alpha
Helix 31	AD4	D	727	731	Right-handed 310
Helix 32	AD5	D	733	767	Right-handed alpha
Helix 33	AD6	D	777	805	Right-handed alpha
Helix 34	AD7	D	822	834	Right-handed alpha
Helix 35	AD8	E	2	9	Right-handed alpha
Helix 36	AD9	E	12	16	Right-handed 310
Helix 37	AE1	E	21	37	Right-handed alpha
Helix 38	AE2	E	41	87	Right-handed alpha
Helix 39	AE3	E	97	138	Right-handed alpha
Helix 40	AE4	E	142	153	Right-handed alpha
Helix 41	AE5	E	160	178	Right-handed alpha
Helix 42	AE6	E	207	217	Right-handed alpha
Helix 43	AE7	E	247	255	Right-handed alpha
Helix 44	AE8	E	303	309	Right-handed alpha
Helix 45	AE9	E	313	318	Right-handed alpha
Helix 46	AF1	E	318	325	Right-handed alpha
Helix 47	AF2	E	328	350	Right-handed alpha
Helix 48	AF3	E	413	415	Right-handed 310
Helix 49	AF4	E	438	446	Right-handed alpha
Helix 50	AF5	E	457	467	Right-handed alpha
Helix 51	AF6	E	478	483	Right-handed 310
Helix 52	AF7	E	510	524	Right-handed alpha
Helix 53	AF8	E	623	648	Right-handed alpha
Helix 54	AF9	E	653	655	Right-handed 310
Helix 55	AG1	E	656	687	Right-handed alpha
Helix 56	AG2	E	697	718	Right-handed alpha

There are 6 sheets in PDB entry 8I6V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	361	first strand
Strand 2	D	336	344	anti-parallel
Strand 3	D	320	327	anti-parallel
Strand 4	D	296	302	anti-parallel
Strand 5	D	415	427	anti-parallel
Strand 6	D	435	447	anti-parallel
Strand 7	D	484	486	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	361	first strand
Strand 2	D	336	344	anti-parallel
Strand 3	D	320	327	anti-parallel
Strand 4	D	296	302	anti-parallel
Strand 5	D	415	427	anti-parallel
Strand 6	D	435	447	anti-parallel
Strand 7	D	490	497	anti-parallel
Strand 8	D	205	212	anti-parallel
Strand 9	D	519	521	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	233	first strand
Strand 2	E	221	223	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	247	first strand
Strand 2	E	293	300	anti-parallel
Strand 3	E	275	283	anti-parallel
Strand 4	E	260	268	anti-parallel
Strand 5	E	236	243	anti-parallel
Strand 6	E	352	366	anti-parallel
Strand 7	E	369	384	anti-parallel
Strand 8	E	417	419	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	247	first strand
Strand 2	E	293	300	anti-parallel
Strand 3	E	275	283	anti-parallel
Strand 4	E	260	268	anti-parallel
Strand 5	E	236	243	anti-parallel
Strand 6	E	352	366	anti-parallel
Strand 7	E	369	384	anti-parallel
Strand 8	E	423	432	anti-parallel
Strand 9	E	194	203	anti-parallel
Strand 10	E	450	452	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	473	474	first strand
Strand 2	E	612	613	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8I6V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8I6V