Analysis of interatomic Contacts of Structural Units in PDB entry:
8I78

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8I78 entry

There are 4 chains in PDB entry 8I78 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	VAL 299
B	THR 3	VAL 299
C	THR 3	VAL 299
D	THR 3	VAL 299

There are 60 helices in PDB entry 8I78. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	26	Right-handed alpha
Helix 2	AA2	A	43	47	Right-handed 310
Helix 3	AA3	A	54	59	Right-handed 310
Helix 4	AA4	A	69	71	Right-handed 310
Helix 5	AA5	A	72	83	Right-handed alpha
Helix 6	AA6	A	93	95	Right-handed 310
Helix 7	AA7	A	96	111	Right-handed alpha
Helix 8	AA8	A	124	137	Right-handed alpha
Helix 9	AA9	A	151	160	Right-handed alpha
Helix 10	AB1	A	192	203	Right-handed alpha
Helix 11	AB2	A	219	223	Right-handed 310
Helix 12	AB3	A	253	269	Right-handed alpha
Helix 13	AB4	A	277	281	Right-handed 310
Helix 14	AB5	A	282	287	Right-handed 310
Helix 15	AB6	A	290	299	Right-handed alpha
Helix 16	AB7	B	13	26	Right-handed alpha
Helix 17	AB8	B	43	47	Right-handed 310
Helix 18	AB9	B	54	59	Right-handed 310
Helix 19	AC1	B	69	71	Right-handed 310
Helix 20	AC2	B	72	83	Right-handed alpha
Helix 21	AC3	B	93	95	Right-handed 310
Helix 22	AC4	B	96	111	Right-handed alpha
Helix 23	AC5	B	124	137	Right-handed alpha
Helix 24	AC6	B	151	160	Right-handed alpha
Helix 25	AC7	B	192	203	Right-handed alpha
Helix 26	AC8	B	219	223	Right-handed 310
Helix 27	AC9	B	253	269	Right-handed alpha
Helix 28	AD1	B	277	281	Right-handed 310
Helix 29	AD2	B	282	287	Right-handed 310
Helix 30	AD3	B	290	299	Right-handed alpha
Helix 31	AD4	C	13	26	Right-handed alpha
Helix 32	AD5	C	43	47	Right-handed 310
Helix 33	AD6	C	54	59	Right-handed 310
Helix 34	AD7	C	69	71	Right-handed 310
Helix 35	AD8	C	72	83	Right-handed alpha
Helix 36	AD9	C	93	95	Right-handed 310
Helix 37	AE1	C	96	111	Right-handed alpha
Helix 38	AE2	C	124	137	Right-handed alpha
Helix 39	AE3	C	151	160	Right-handed alpha
Helix 40	AE4	C	192	203	Right-handed alpha
Helix 41	AE5	C	219	223	Right-handed 310
Helix 42	AE6	C	253	269	Right-handed alpha
Helix 43	AE7	C	277	281	Right-handed 310
Helix 44	AE8	C	282	287	Right-handed 310
Helix 45	AE9	C	290	299	Right-handed alpha
Helix 46	AF1	D	13	26	Right-handed alpha
Helix 47	AF2	D	43	47	Right-handed 310
Helix 48	AF3	D	54	59	Right-handed 310
Helix 49	AF4	D	69	71	Right-handed 310
Helix 50	AF5	D	72	83	Right-handed alpha
Helix 51	AF6	D	93	95	Right-handed 310
Helix 52	AF7	D	96	111	Right-handed alpha
Helix 53	AF8	D	124	137	Right-handed alpha
Helix 54	AF9	D	151	160	Right-handed alpha
Helix 55	AG1	D	192	203	Right-handed alpha
Helix 56	AG2	D	219	223	Right-handed 310
Helix 57	AG3	D	253	269	Right-handed alpha
Helix 58	AG4	D	277	281	Right-handed 310
Helix 59	AG5	D	282	287	Right-handed 310
Helix 60	AG6	D	290	299	Right-handed alpha

There are 11 sheets in PDB entry 8I78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	29	35	parallel
Strand 3	A	5	10	parallel
Strand 4	A	63	66	parallel
Strand 5	A	86	88	parallel
Strand 6	A	114	116	parallel
Strand 7	A	274	276	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	146	first strand
Strand 2	A	226	237	anti-parallel
Strand 3	A	240	252	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	164	173	anti-parallel
Strand 3	A	179	187	anti-parallel
Strand 4	A	210	215	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	52	first strand
Strand 2	B	29	35	parallel
Strand 3	B	5	10	parallel
Strand 4	B	63	66	parallel
Strand 5	B	86	89	parallel
Strand 6	B	114	116	parallel
Strand 7	B	274	276	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	146	first strand
Strand 2	B	226	237	anti-parallel
Strand 3	B	240	252	anti-parallel
Strand 4	C	240	252	anti-parallel
Strand 5	C	226	237	anti-parallel
Strand 6	C	139	146	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	164	173	anti-parallel
Strand 3	B	179	187	anti-parallel
Strand 4	B	210	215	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	29	35	parallel
Strand 3	C	5	10	parallel
Strand 4	C	63	66	parallel
Strand 5	C	86	88	parallel
Strand 6	C	114	116	parallel
Strand 7	C	274	276	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	150	first strand
Strand 2	C	164	173	anti-parallel
Strand 3	C	179	187	anti-parallel
Strand 4	C	210	215	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	52	first strand
Strand 2	D	29	35	parallel
Strand 3	D	5	10	parallel
Strand 4	D	63	66	parallel
Strand 5	D	86	88	parallel
Strand 6	D	114	116	parallel
Strand 7	D	274	276	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	146	first strand
Strand 2	D	226	237	anti-parallel
Strand 3	D	240	252	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	150	first strand
Strand 2	D	164	173	anti-parallel
Strand 3	D	179	187	anti-parallel
Strand 4	D	210	215	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8I78

Analysis of interatomic Contacts of Structural Units in PDB entry:
8I78