Analysis of interatomic Contacts of Structural Units in PDB entry:
8I79

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8I79 entry

There are 8 chains in PDB entry 8I79 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	LEU 45	TRP 289
B	ASP 26	LYS 271
A	LEU 45	TRP 289
C	ASP 26	GLU 267
D	LEU 45	TRP 289
E	ASP 26	GLU 267
G	LEU 45	TRP 289
H	ASP 26	ASP 26

There are110 helices in PDB entry 8I79. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	66	70	Right-handed alpha
Helix 2	AA2	F	75	81	Right-handed alpha
Helix 3	AA3	F	103	113	Right-handed alpha
Helix 4	AA4	F	121	133	Right-handed alpha
Helix 5	AA5	F	134	143	Right-handed alpha
Helix 6	AA6	F	144	158	Right-handed alpha
Helix 7	AA7	F	162	182	Right-handed alpha
Helix 8	AA8	F	240	255	Right-handed alpha
Helix 9	AA9	B	27	46	Right-handed alpha
Helix 10	AB1	B	53	67	Right-handed alpha
Helix 11	AB2	B	69	86	Right-handed alpha
Helix 12	AB3	B	88	96	Right-handed alpha
Helix 13	AB4	B	100	123	Right-handed alpha
Helix 14	AB5	B	123	129	Right-handed alpha
Helix 15	AB6	B	129	134	Right-handed alpha
Helix 16	AB7	B	138	152	Right-handed alpha
Helix 17	AB8	B	154	175	Right-handed alpha
Helix 18	AB9	B	179	194	Right-handed alpha
Helix 19	AC1	B	198	205	Right-handed alpha
Helix 20	AC2	B	205	228	Right-handed alpha
Helix 21	AC3	B	229	252	Right-handed alpha
Helix 22	AC4	B	256	270	Right-handed alpha
Helix 23	AC5	A	66	70	Right-handed alpha
Helix 24	AC6	A	75	81	Right-handed alpha
Helix 25	AC7	A	103	113	Right-handed alpha
Helix 26	AC8	A	118	120	Right-handed 310
Helix 27	AC9	A	121	133	Right-handed alpha
Helix 28	AD1	A	134	143	Right-handed alpha
Helix 29	AD2	A	144	158	Right-handed alpha
Helix 30	AD3	A	162	182	Right-handed alpha
Helix 31	AD4	A	240	255	Right-handed alpha
Helix 32	AD5	C	27	46	Right-handed alpha
Helix 33	AD6	C	53	67	Right-handed alpha
Helix 34	AD7	C	69	86	Right-handed alpha
Helix 35	AD8	C	88	96	Right-handed alpha
Helix 36	AD9	C	100	123	Right-handed alpha
Helix 37	AE1	C	123	129	Right-handed alpha
Helix 38	AE2	C	129	134	Right-handed alpha
Helix 39	AE3	C	138	151	Right-handed alpha
Helix 40	AE4	C	154	175	Right-handed alpha
Helix 41	AE5	C	180	193	Right-handed alpha
Helix 42	AE6	C	198	205	Right-handed alpha
Helix 43	AE7	C	205	228	Right-handed alpha
Helix 44	AE8	C	229	252	Right-handed alpha
Helix 45	AE9	C	256	267	Right-handed alpha
Helix 46	AF1	D	66	70	Right-handed alpha
Helix 47	AF2	D	75	81	Right-handed alpha
Helix 48	AF3	D	103	113	Right-handed alpha
Helix 49	AF4	D	121	133	Right-handed alpha
Helix 50	AF5	D	134	143	Right-handed alpha
Helix 51	AF6	D	144	158	Right-handed alpha
Helix 52	AF7	D	162	182	Right-handed alpha
Helix 53	AF8	D	240	255	Right-handed alpha
Helix 54	AF9	E	27	46	Right-handed alpha
Helix 55	AG1	E	53	67	Right-handed alpha
Helix 56	AG2	E	69	86	Right-handed alpha
Helix 57	AG3	E	88	96	Right-handed alpha
Helix 58	AG4	E	100	123	Right-handed alpha
Helix 59	AG5	E	123	129	Right-handed alpha
Helix 60	AG6	E	129	134	Right-handed alpha
Helix 61	AG7	E	138	152	Right-handed alpha
Helix 62	AG8	E	154	175	Right-handed alpha
Helix 63	AG9	E	179	194	Right-handed alpha
Helix 64	AH1	E	198	205	Right-handed alpha
Helix 65	AH2	E	205	228	Right-handed alpha
Helix 66	AH3	E	229	252	Right-handed alpha
Helix 67	AH4	E	256	267	Right-handed alpha
Helix 68	AH5	G	66	70	Right-handed alpha
Helix 69	AH6	G	75	81	Right-handed alpha
Helix 70	AH7	G	103	113	Right-handed alpha
Helix 71	AH8	G	121	133	Right-handed alpha
Helix 72	AH9	G	134	143	Right-handed alpha
Helix 73	AI1	G	144	158	Right-handed alpha
Helix 74	AI2	G	162	182	Right-handed alpha
Helix 75	AI3	G	240	255	Right-handed alpha
Helix 76	AI4	H	27	46	Right-handed alpha
Helix 77	AI5	H	53	67	Right-handed alpha
Helix 78	AI6	H	69	86	Right-handed alpha
Helix 79	AI7	H	88	95	Right-handed alpha
Helix 80	AI8	H	100	123	Right-handed alpha
Helix 81	AI9	H	123	129	Right-handed alpha
Helix 82	AJ1	H	129	134	Right-handed alpha
Helix 83	AJ2	H	138	152	Right-handed alpha
Helix 84	AJ3	H	154	175	Right-handed alpha
Helix 85	AJ4	H	179	194	Right-handed alpha
Helix 86	AJ5	H	198	205	Right-handed alpha
Helix 87	AJ6	H	205	224	Right-handed alpha
Helix 88	AJ7	H	230	252	Right-handed alpha
Helix 89	AJ8	H	256	270	Right-handed alpha
Helix 90	AJ9	I	66	70	Right-handed alpha
Helix 91	AK1	I	75	81	Right-handed alpha
Helix 92	AK2	I	103	113	Right-handed alpha
Helix 93	AK3	I	121	133	Right-handed alpha
Helix 94	AK4	I	134	143	Right-handed alpha
Helix 95	AK5	I	144	158	Right-handed alpha
Helix 96	AK6	I	162	182	Right-handed alpha
Helix 97	AK7	I	240	255	Right-handed alpha
Helix 98	AK8	J	27	46	Right-handed alpha
Helix 99	AK9	J	53	67	Right-handed alpha
Helix 100	AL1	J	69	97	Right-handed alpha
Helix 101	AL2	J	100	123	Right-handed alpha
Helix 102	AL3	J	123	129	Right-handed alpha
Helix 103	AL4	J	129	134	Right-handed alpha
Helix 104	AL5	J	138	152	Right-handed alpha
Helix 105	AL6	J	154	175	Right-handed alpha
Helix 106	AL7	J	179	194	Right-handed alpha
Helix 107	AL8	J	198	205	Right-handed alpha
Helix 108	AL9	J	205	220	Right-handed alpha
Helix 109	AM1	J	235	252	Right-handed alpha
Helix 110	AM2	J	256	268	Right-handed alpha

There are 10 sheets in PDB entry 8I79. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	65	first strand
Strand 2	F	52	57	anti-parallel
Strand 3	F	95	97	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	230	232	first strand
Strand 2	F	185	192	parallel
Strand 3	F	281	287	anti-parallel
Strand 4	F	258	263	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	65	first strand
Strand 2	A	52	57	anti-parallel
Strand 3	A	95	97	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	232	first strand
Strand 2	A	185	192	parallel
Strand 3	A	281	287	anti-parallel
Strand 4	A	258	263	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	65	first strand
Strand 2	D	52	57	anti-parallel
Strand 3	D	95	97	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	232	first strand
Strand 2	D	185	192	parallel
Strand 3	D	281	287	anti-parallel
Strand 4	D	258	263	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	60	65	first strand
Strand 2	G	52	57	anti-parallel
Strand 3	G	95	97	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	230	232	first strand
Strand 2	G	185	192	parallel
Strand 3	G	281	287	anti-parallel
Strand 4	G	258	263	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	60	65	first strand
Strand 2	I	52	57	anti-parallel
Strand 3	I	95	97	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	230	232	first strand
Strand 2	I	185	192	parallel
Strand 3	I	281	287	anti-parallel
Strand 4	I	258	263	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8I79

Analysis of interatomic Contacts of Structural Units in PDB entry:
8I79