Analysis of interatomic Contacts of Structural Units in PDB entry:
8I83

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8I83 entry

There are 4 chains in PDB entry 8I83 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU -1	VAL 408
B	LEU 1	VAL 408
C	LEU -1	VAL 408
D	LEU -1	VAL 60

There are115 helices in PDB entry 8I83. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	0	16	Right-handed alpha
Helix 2	AA2	A	19	27	Right-handed alpha
Helix 3	AA3	A	74	92	Right-handed alpha
Helix 4	AA4	A	106	110	Right-handed 310
Helix 5	AA5	A	111	127	Right-handed alpha
Helix 6	AA6	A	128	130	Right-handed 310
Helix 7	AA7	A	144	160	Right-handed alpha
Helix 8	AA8	A	163	167	Right-handed 310
Helix 9	AA9	A	171	175	Right-handed 310
Helix 10	AB1	A	182	199	Right-handed alpha
Helix 11	AB2	A	202	205	Right-handed 310
Helix 12	AB3	A	214	227	Right-handed alpha
Helix 13	AB4	A	248	255	Right-handed alpha
Helix 14	AB5	A	262	267	Right-handed 310
Helix 15	AB6	A	271	276	Right-handed alpha
Helix 16	AB7	A	314	324	Right-handed alpha
Helix 17	AB8	A	330	335	Right-handed alpha
Helix 18	AB9	A	336	352	Right-handed alpha
Helix 19	AC1	A	356	383	Right-handed alpha
Helix 20	AC2	A	385	405	Right-handed alpha
Helix 21	AC3	B	2	17	Right-handed alpha
Helix 22	AC4	B	19	27	Right-handed alpha
Helix 23	AC5	B	74	92	Right-handed alpha
Helix 24	AC6	B	106	110	Right-handed 310
Helix 25	AC7	B	111	127	Right-handed alpha
Helix 26	AC8	B	128	130	Right-handed 310
Helix 27	AC9	B	144	160	Right-handed alpha
Helix 28	AD1	B	163	167	Right-handed 310
Helix 29	AD2	B	171	175	Right-handed 310
Helix 30	AD3	B	182	199	Right-handed alpha
Helix 31	AD4	B	214	227	Right-handed alpha
Helix 32	AD5	B	248	255	Right-handed alpha
Helix 33	AD6	B	262	266	Right-handed 310
Helix 34	AD7	B	271	277	Right-handed alpha
Helix 35	AD8	B	314	324	Right-handed alpha
Helix 36	AD9	B	330	335	Right-handed alpha
Helix 37	AE1	B	336	352	Right-handed alpha
Helix 38	AE2	B	356	383	Right-handed alpha
Helix 39	AE3	B	385	405	Right-handed alpha
Helix 40	AE4	C	0	17	Right-handed alpha
Helix 41	AE5	C	19	27	Right-handed alpha
Helix 42	AE6	C	74	92	Right-handed alpha
Helix 43	AE7	C	106	110	Right-handed 310
Helix 44	AE8	C	111	127	Right-handed alpha
Helix 45	AE9	C	128	130	Right-handed 310
Helix 46	AF1	C	144	160	Right-handed alpha
Helix 47	AF2	C	163	167	Right-handed 310
Helix 48	AF3	C	171	175	Right-handed 310
Helix 49	AF4	C	182	199	Right-handed alpha
Helix 50	AF5	C	214	227	Right-handed alpha
Helix 51	AF6	C	248	255	Right-handed alpha
Helix 52	AF7	C	262	266	Right-handed 310
Helix 53	AF8	C	271	276	Right-handed alpha
Helix 54	AF9	C	296	300	Right-handed 310
Helix 55	AG1	C	314	324	Right-handed alpha
Helix 56	AG2	C	330	335	Right-handed alpha
Helix 57	AG3	C	336	352	Right-handed alpha
Helix 58	AG4	C	356	383	Right-handed alpha
Helix 59	AG5	C	385	405	Right-handed alpha
Helix 60	AG6	D	0	17	Right-handed alpha
Helix 61	AG7	D	19	27	Right-handed alpha
Helix 62	AG8	D	74	92	Right-handed alpha
Helix 63	AG9	D	106	110	Right-handed 310
Helix 64	AH1	D	111	127	Right-handed alpha
Helix 65	AH2	D	128	130	Right-handed 310
Helix 66	AH3	D	144	160	Right-handed alpha
Helix 67	AH4	D	163	167	Right-handed 310
Helix 68	AH5	D	171	175	Right-handed 310
Helix 69	AH6	D	182	199	Right-handed alpha
Helix 70	AH7	D	215	225	Right-handed alpha
Helix 71	AH8	D	315	325	Right-handed alpha
Helix 72	AH9	D	330	335	Right-handed alpha
Helix 73	AI1	D	336	352	Right-handed alpha
Helix 74	AI2	D	356	382	Right-handed alpha
Helix 75	AI3	D	385	405	Right-handed alpha
Helix 76	AI4	F	0	16	Right-handed alpha
Helix 77	AI5	F	19	27	Right-handed alpha
Helix 78	AI6	F	74	92	Right-handed alpha
Helix 79	AI7	F	106	110	Right-handed 310
Helix 80	AI8	F	111	127	Right-handed alpha
Helix 81	AI9	F	128	130	Right-handed 310
Helix 82	AJ1	F	144	160	Right-handed alpha
Helix 83	AJ2	F	163	167	Right-handed 310
Helix 84	AJ3	F	171	175	Right-handed 310
Helix 85	AJ4	F	182	199	Right-handed alpha
Helix 86	AJ5	F	214	227	Right-handed alpha
Helix 87	AJ6	F	248	255	Right-handed alpha
Helix 88	AJ7	F	262	266	Right-handed 310
Helix 89	AJ8	F	271	277	Right-handed alpha
Helix 90	AJ9	F	296	300	Right-handed 310
Helix 91	AK1	F	314	324	Right-handed alpha
Helix 92	AK2	F	330	335	Right-handed alpha
Helix 93	AK3	F	336	352	Right-handed alpha
Helix 94	AK4	F	356	383	Right-handed alpha
Helix 95	AK5	F	385	405	Right-handed alpha
Helix 96	AK6	E	0	16	Right-handed alpha
Helix 97	AK7	E	19	27	Right-handed alpha
Helix 98	AK8	E	74	92	Right-handed alpha
Helix 99	AK9	E	106	110	Right-handed 310
Helix 100	AL1	E	111	127	Right-handed alpha
Helix 101	AL2	E	128	130	Right-handed 310
Helix 102	AL3	E	144	160	Right-handed alpha
Helix 103	AL4	E	163	167	Right-handed 310
Helix 104	AL5	E	171	175	Right-handed 310
Helix 105	AL6	E	182	198	Right-handed alpha
Helix 106	AL7	E	214	227	Right-handed alpha
Helix 107	AL8	E	248	255	Right-handed alpha
Helix 108	AL9	E	262	266	Right-handed 310
Helix 109	AM1	E	271	276	Right-handed alpha
Helix 110	AM2	E	296	300	Right-handed 310
Helix 111	AM3	E	314	324	Right-handed alpha
Helix 112	AM4	E	330	335	Right-handed alpha
Helix 113	AM5	E	335	352	Right-handed alpha
Helix 114	AM6	E	356	383	Right-handed alpha
Helix 115	AM7	E	385	405	Right-handed alpha

There are 15 sheets in PDB entry 8I83. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	40	first strand
Strand 2	A	46	55	anti-parallel
Strand 3	A	97	104	anti-parallel
Strand 4	A	67	70	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	40	first strand
Strand 2	A	46	55	anti-parallel
Strand 3	A	97	104	anti-parallel
Strand 4	A	63	64	parallel
Strand 5	A	135	136	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	230	235	anti-parallel
Strand 3	A	207	210	parallel
Strand 4	A	279	284	parallel
Strand 5	A	301	306	parallel
Strand 6	A	327	329	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	70	first strand
Strand 2	B	97	104	parallel
Strand 3	B	63	64	parallel
Strand 4	B	135	136	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	70	first strand
Strand 2	B	97	104	parallel
Strand 3	B	46	57	anti-parallel
Strand 4	B	31	40	anti-parallel
Strand 5	D	31	40	anti-parallel
Strand 6	D	46	55	anti-parallel
Strand 7	D	97	104	anti-parallel
Strand 8	D	63	70	parallel
Strand 9	D	135	138	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	242	first strand
Strand 2	B	230	235	anti-parallel
Strand 3	B	207	211	parallel
Strand 4	B	282	285	parallel
Strand 5	B	304	306	parallel
Strand 6	B	327	329	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	40	first strand
Strand 2	C	46	55	anti-parallel
Strand 3	C	97	104	anti-parallel
Strand 4	C	67	70	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	40	first strand
Strand 2	C	46	55	anti-parallel
Strand 3	C	97	104	anti-parallel
Strand 4	C	63	64	parallel
Strand 5	C	135	136	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	242	first strand
Strand 2	C	230	235	anti-parallel
Strand 3	C	207	210	parallel
Strand 4	C	280	284	parallel
Strand 5	C	302	306	parallel
Strand 6	C	327	329	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	40	first strand
Strand 2	F	46	55	anti-parallel
Strand 3	F	97	103	anti-parallel
Strand 4	F	67	69	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	40	first strand
Strand 2	F	46	55	anti-parallel
Strand 3	F	97	103	anti-parallel
Strand 4	F	63	64	parallel
Strand 5	F	135	136	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	240	242	first strand
Strand 2	F	230	235	anti-parallel
Strand 3	F	207	211	parallel
Strand 4	F	282	285	parallel
Strand 5	F	304	306	parallel
Strand 6	F	327	329	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	40	first strand
Strand 2	E	46	55	anti-parallel
Strand 3	E	97	104	anti-parallel
Strand 4	E	67	70	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	40	first strand
Strand 2	E	46	55	anti-parallel
Strand 3	E	97	104	anti-parallel
Strand 4	E	63	64	parallel
Strand 5	E	135	136	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	240	242	first strand
Strand 2	E	230	235	anti-parallel
Strand 3	E	207	211	parallel
Strand 4	E	282	285	parallel
Strand 5	E	304	306	parallel
Strand 6	E	327	329	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8I83

Analysis of interatomic Contacts of Structural Units in PDB entry:
8I83