Analysis of interatomic Contacts of Structural Units in PDB entry:
8I85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8I85 entry

There are 2 chains in PDB entry 8I85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 2ARG 286
A
 MET 1ARG 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8I85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
2 7Right-handed alpha
Helix 2
AA2
B
7 15Right-handed alpha
Helix 3
AA3
B
19 23Right-handed 310
Helix 4
AA4
B
46 51Right-handed alpha
Helix 5
AA5
B
52 65Right-handed alpha
Helix 6
AA6
B
78 84Right-handed 310
Helix 7
AA7
B
101 106Right-handed 310
Helix 8
AA8
B
107 130Right-handed alpha
Helix 9
AA9
B
131 138Right-handed alpha
Helix 10
AB1
B
143 156Right-handed alpha
Helix 11
AB2
B
157 160Right-handed 310
Helix 12
AB3
B
161 175Right-handed alpha
Helix 13
AB4
B
176 178Right-handed 310
Helix 14
AB5
B
191 193Right-handed 310
Helix 15
AB6
B
220 232Right-handed alpha
Helix 16
AB7
B
232 244Right-handed alpha
Helix 17
AB8
B
247 259Right-handed alpha
Helix 18
AB9
B
260 273Right-handed alpha
Helix 19
AC1
B
274 282Right-handed alpha
Helix 20
AC2
A
2 7Right-handed alpha
Helix 21
AC3
A
7 15Right-handed alpha
Helix 22
AC4
A
19 23Right-handed 310
Helix 23
AC5
A
46 65Right-handed alpha
Helix 24
AC6
A
101 106Right-handed 310
Helix 25
AC7
A
107 129Right-handed alpha
Helix 26
AC8
A
131 138Right-handed alpha
Helix 27
AC9
A
143 156Right-handed alpha
Helix 28
AD1
A
157 160Right-handed 310
Helix 29
AD2
A
161 178Right-handed alpha
Helix 30
AD3
A
191 193Right-handed 310
Helix 31
AD4
A
220 232Right-handed alpha
Helix 32
AD5
A
232 243Right-handed alpha
Helix 33
AD6
A
247 259Right-handed alpha
Helix 34
AD7
A
260 273Right-handed alpha
Helix 35
AD8
A
274 282Right-handed alpha
Helix 36
AD9
A
283 286Right-handed 310
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There are 6 sheets in PDB entry 8I85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 27first strand
Strand 2
B
31 35anti-parallel
Strand 3
B
39 44anti-parallel
Strand 4
B
90 93anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 186first strand
Strand 2
B
216 218anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 197first strand
Strand 2
B
206 209anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
31 35anti-parallel
Strand 3
A
39 44anti-parallel
Strand 4
A
89 93anti-parallel
Strand 5
A
75 79anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 186first strand
Strand 2
A
216 218anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 198first strand
Strand 2
A
205 209anti-parallel
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