Analysis of interatomic Contacts of Structural Units in PDB entry:
8I8Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8I8Z entry

There is 1 chain in PDB entry 8I8Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 9ARG 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8I8Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 35Right-handed alpha
Helix 2
AA2
A
44 55Right-handed alpha
Helix 3
AA3
A
90 114Right-handed alpha
Helix 4
AA4
A
129 137Right-handed alpha
Helix 5
AA5
A
148 160Right-handed alpha
Helix 6
AA6
A
189 193Right-handed 310
Helix 7
AA7
A
197 199Right-handed 310
Helix 8
AA8
A
200 213Right-handed alpha
Helix 9
AA9
A
214 217Right-handed 310
Helix 10
AB1
A
229 240Right-handed alpha
Helix 11
AB2
A
247 252Right-handed alpha
Helix 12
AB3
A
267 275Right-handed alpha
Helix 13
AB4
A
293 308Right-handed alpha
Helix 14
AB5
A
332 338Right-handed alpha
Helix 15
AB6
A
348 354Right-handed alpha
Helix 16
AB7
A
366 376Right-handed alpha
Helix 17
AB8
A
388 399Right-handed alpha
Helix 18
AB9
A
417 430Right-handed alpha
Helix 19
AC1
A
433 453Right-handed alpha
Helix 20
AC2
A
456 473Right-handed alpha
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There are 2 sheets in PDB entry 8I8Z. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
68 72anti-parallel
Strand 3
A
38 42parallel
Strand 4
A
10 14parallel
Strand 5
A
120 123parallel
Strand 6
A
141 145parallel
Strand 7
A
219 222parallel
Strand 8
A
242 244parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 344first strand
Strand 2
A
310 314parallel
Strand 3
A
281 285parallel
Strand 4
A
358 363parallel
Strand 5
A
380 382parallel
Strand 6
A
403 405parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il