Analysis of interatomic Contacts of Structural Units in PDB entry:
8I98

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8I98 entry

There are 20 chains in PDB entry 8I98 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 140
B	HIS 1000	SER 1140
C	MET 2001	SER 2140
D	HIS 3000	SER 3140
E	HIS 4000	GLN 4141
F	HIS 5000	GLY 5142
G	MET 6001	SER 6140
H	MET 7001	GLN 7141
I	MET 8001	GLN 8141
J	HIS 9000	SER 9140
K	MET 101	SER 240
L	HIS 1000	SER 1140
M	MET 2001	SER 2140
N	MET 3001	SER 3140
O	MET 4001	SER 4140
P	GLY 5002	GLY 5142
Q	MET 6001	SER 6140
R	HIS 7000	MET 7139
S	MET 8001	GLN 8141
T	MET 9001	SER 9140

There are117 helices in PDB entry 8I98. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	36	Right-handed alpha
Helix 2	AA2	A	56	69	Right-handed alpha
Helix 3	AA3	A	99	101	Right-handed 310
Helix 4	AA4	A	104	113	Right-handed alpha
Helix 5	AA5	A	120	124	Right-handed 310
Helix 6	AA6	A	125	140	Right-handed alpha
Helix 7	AA7	B	1017	1036	Right-handed alpha
Helix 8	AA8	B	1056	1068	Right-handed alpha
Helix 9	AA9	B	1099	1101	Right-handed 310
Helix 10	AB1	B	1102	1113	Right-handed alpha
Helix 11	AB2	B	1120	1124	Right-handed 310
Helix 12	AB3	B	1125	1139	Right-handed alpha
Helix 13	AB4	C	2017	2035	Right-handed alpha
Helix 14	AB5	C	2056	2069	Right-handed alpha
Helix 15	AB6	C	2099	2101	Right-handed 310
Helix 16	AB7	C	2102	2113	Right-handed alpha
Helix 17	AB8	C	2120	2124	Right-handed 310
Helix 18	AB9	C	2125	2139	Right-handed alpha
Helix 19	AC1	D	3017	3036	Right-handed alpha
Helix 20	AC2	D	3056	3068	Right-handed alpha
Helix 21	AC3	D	3099	3101	Right-handed 310
Helix 22	AC4	D	3102	3113	Right-handed alpha
Helix 23	AC5	D	3120	3124	Right-handed 310
Helix 24	AC6	D	3125	3140	Right-handed alpha
Helix 25	AC7	E	4017	4036	Right-handed alpha
Helix 26	AC8	E	4056	4068	Right-handed alpha
Helix 27	AC9	E	4099	4101	Right-handed 310
Helix 28	AD1	E	4102	4113	Right-handed alpha
Helix 29	AD2	E	4120	4124	Right-handed 310
Helix 30	AD3	E	4125	4140	Right-handed alpha
Helix 31	AD4	F	5017	5035	Right-handed alpha
Helix 32	AD5	F	5056	5069	Right-handed alpha
Helix 33	AD6	F	5099	5101	Right-handed 310
Helix 34	AD7	F	5102	5113	Right-handed alpha
Helix 35	AD8	F	5120	5124	Right-handed 310
Helix 36	AD9	F	5125	5140	Right-handed alpha
Helix 37	AE1	G	6017	6035	Right-handed alpha
Helix 38	AE2	G	6056	6069	Right-handed alpha
Helix 39	AE3	G	6099	6101	Right-handed 310
Helix 40	AE4	G	6102	6113	Right-handed alpha
Helix 41	AE5	G	6120	6124	Right-handed 310
Helix 42	AE6	G	6125	6139	Right-handed alpha
Helix 43	AE7	H	7017	7036	Right-handed alpha
Helix 44	AE8	H	7056	7069	Right-handed alpha
Helix 45	AE9	H	7099	7101	Right-handed 310
Helix 46	AF1	H	7102	7113	Right-handed alpha
Helix 47	AF2	H	7120	7124	Right-handed 310
Helix 48	AF3	H	7125	7140	Right-handed alpha
Helix 49	AF4	I	8017	8036	Right-handed alpha
Helix 50	AF5	I	8056	8067	Right-handed alpha
Helix 51	AF6	I	8099	8101	Right-handed 310
Helix 52	AF7	I	8102	8113	Right-handed alpha
Helix 53	AF8	I	8120	8124	Right-handed 310
Helix 54	AF9	I	8125	8140	Right-handed alpha
Helix 55	AG1	J	9017	9036	Right-handed alpha
Helix 56	AG2	J	9056	9068	Right-handed alpha
Helix 57	AG3	J	9099	9101	Right-handed 310
Helix 58	AG4	J	9102	9113	Right-handed alpha
Helix 59	AG5	J	9120	9124	Right-handed 310
Helix 60	AG6	J	9125	9139	Right-handed alpha
Helix 61	AG7	K	117	135	Right-handed alpha
Helix 62	AG8	K	156	168	Right-handed alpha
Helix 63	AG9	K	199	201	Right-handed 310
Helix 64	AH1	K	202	213	Right-handed alpha
Helix 65	AH2	K	220	224	Right-handed 310
Helix 66	AH3	K	225	240	Right-handed alpha
Helix 67	AH4	L	1017	1036	Right-handed alpha
Helix 68	AH5	L	1056	1068	Right-handed alpha
Helix 69	AH6	L	1099	1101	Right-handed 310
Helix 70	AH7	L	1102	1113	Right-handed alpha
Helix 71	AH8	L	1120	1124	Right-handed 310
Helix 72	AH9	L	1125	1139	Right-handed alpha
Helix 73	AI1	M	2017	2036	Right-handed alpha
Helix 74	AI2	M	2056	2067	Right-handed alpha
Helix 75	AI3	M	2102	2113	Right-handed alpha
Helix 76	AI4	M	2120	2124	Right-handed 310
Helix 77	AI5	M	2125	2139	Right-handed alpha
Helix 78	AI6	N	3017	3036	Right-handed alpha
Helix 79	AI7	N	3056	3068	Right-handed alpha
Helix 80	AI8	N	3099	3101	Right-handed 310
Helix 81	AI9	N	3102	3113	Right-handed alpha
Helix 82	AJ1	N	3120	3124	Right-handed 310
Helix 83	AJ2	N	3125	3139	Right-handed alpha
Helix 84	AJ3	O	4017	4036	Right-handed alpha
Helix 85	AJ4	O	4056	4067	Right-handed alpha
Helix 86	AJ5	O	4099	4101	Right-handed 310
Helix 87	AJ6	O	4102	4113	Right-handed alpha
Helix 88	AJ7	O	4120	4124	Right-handed 310
Helix 89	AJ8	O	4125	4140	Right-handed alpha
Helix 90	AJ9	P	5017	5036	Right-handed alpha
Helix 91	AK1	P	5056	5067	Right-handed alpha
Helix 92	AK2	P	5099	5101	Right-handed 310
Helix 93	AK3	P	5104	5113	Right-handed alpha
Helix 94	AK4	P	5120	5124	Right-handed 310
Helix 95	AK5	P	5125	5139	Right-handed alpha
Helix 96	AK6	Q	6017	6036	Right-handed alpha
Helix 97	AK7	Q	6056	6068	Right-handed alpha
Helix 98	AK8	Q	6102	6113	Right-handed alpha
Helix 99	AK9	Q	6120	6124	Right-handed 310
Helix 100	AL1	Q	6125	6139	Right-handed alpha
Helix 101	AL2	R	7017	7036	Right-handed alpha
Helix 102	AL3	R	7056	7068	Right-handed alpha
Helix 103	AL4	R	7099	7101	Right-handed 310
Helix 104	AL5	R	7102	7113	Right-handed alpha
Helix 105	AL6	R	7120	7124	Right-handed 310
Helix 106	AL7	R	7125	7139	Right-handed alpha
Helix 107	AL8	S	8017	8036	Right-handed alpha
Helix 108	AL9	S	8056	8068	Right-handed alpha
Helix 109	AM1	S	8104	8113	Right-handed alpha
Helix 110	AM2	S	8120	8124	Right-handed 310
Helix 111	AM3	S	8125	8141	Right-handed alpha
Helix 112	AM4	T	9017	9036	Right-handed alpha
Helix 113	AM5	T	9056	9068	Right-handed alpha
Helix 114	AM6	T	9099	9101	Right-handed 310
Helix 115	AM7	T	9102	9113	Right-handed alpha
Helix 116	AM8	T	9120	9124	Right-handed 310
Helix 117	AM9	T	9125	9139	Right-handed alpha

There are 20 sheets in PDB entry 8I98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	82	first strand
Strand 2	A	3	12	anti-parallel
Strand 3	A	47	55	anti-parallel
Strand 4	A	38	44	anti-parallel
Strand 5	A	95	97	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1072	1082	first strand
Strand 2	B	1003	1012	anti-parallel
Strand 3	B	1047	1055	anti-parallel
Strand 4	B	1038	1044	anti-parallel
Strand 5	B	1094	1097	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2072	2082	first strand
Strand 2	C	2003	2012	anti-parallel
Strand 3	C	2047	2055	anti-parallel
Strand 4	C	2038	2044	anti-parallel
Strand 5	C	2095	2097	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3072	3082	first strand
Strand 2	D	3003	3012	anti-parallel
Strand 3	D	3047	3055	anti-parallel
Strand 4	D	3038	3044	anti-parallel
Strand 5	D	3094	3097	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4072	4082	first strand
Strand 2	E	4003	4012	anti-parallel
Strand 3	E	4047	4055	anti-parallel
Strand 4	E	4038	4044	anti-parallel
Strand 5	E	4095	4097	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5072	5082	first strand
Strand 2	F	5003	5012	anti-parallel
Strand 3	F	5047	5055	anti-parallel
Strand 4	F	5038	5044	anti-parallel
Strand 5	F	5094	5097	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6072	6082	first strand
Strand 2	G	6003	6012	anti-parallel
Strand 3	G	6047	6055	anti-parallel
Strand 4	G	6038	6044	anti-parallel
Strand 5	G	6095	6097	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7072	7082	first strand
Strand 2	H	7003	7012	anti-parallel
Strand 3	H	7047	7055	anti-parallel
Strand 4	H	7038	7044	anti-parallel
Strand 5	H	7095	7097	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	8072	8082	first strand
Strand 2	I	8003	8012	anti-parallel
Strand 3	I	8047	8055	anti-parallel
Strand 4	I	8038	8044	anti-parallel
Strand 5	I	8095	8097	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9072	9082	first strand
Strand 2	J	9003	9012	anti-parallel
Strand 3	J	9047	9055	anti-parallel
Strand 4	J	9038	9044	anti-parallel
Strand 5	J	9095	9097	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	172	182	first strand
Strand 2	K	103	112	anti-parallel
Strand 3	K	147	155	anti-parallel
Strand 4	K	138	144	anti-parallel
Strand 5	K	194	197	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1072	1082	first strand
Strand 2	L	1003	1012	anti-parallel
Strand 3	L	1047	1055	anti-parallel
Strand 4	L	1038	1044	anti-parallel
Strand 5	L	1095	1097	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	2072	2082	first strand
Strand 2	M	2003	2012	anti-parallel
Strand 3	M	2047	2055	anti-parallel
Strand 4	M	2038	2044	anti-parallel
Strand 5	M	2095	2097	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3072	3082	first strand
Strand 2	N	3003	3012	anti-parallel
Strand 3	N	3047	3055	anti-parallel
Strand 4	N	3038	3044	anti-parallel
Strand 5	N	3095	3097	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	4072	4082	first strand
Strand 2	O	4003	4012	anti-parallel
Strand 3	O	4047	4055	anti-parallel
Strand 4	O	4038	4044	anti-parallel
Strand 5	O	4095	4097	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	5072	5082	first strand
Strand 2	P	5003	5012	anti-parallel
Strand 3	P	5047	5055	anti-parallel
Strand 4	P	5038	5044	anti-parallel
Strand 5	P	5095	5097	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	6072	6082	first strand
Strand 2	Q	6003	6012	anti-parallel
Strand 3	Q	6047	6055	anti-parallel
Strand 4	Q	6038	6044	anti-parallel
Strand 5	Q	6095	6097	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	7072	7082	first strand
Strand 2	R	7003	7012	anti-parallel
Strand 3	R	7047	7055	anti-parallel
Strand 4	R	7038	7044	anti-parallel
Strand 5	R	7095	7097	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	8072	8082	first strand
Strand 2	S	8003	8012	anti-parallel
Strand 3	S	8047	8055	anti-parallel
Strand 4	S	8038	8044	anti-parallel
Strand 5	S	8095	8097	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	9072	9082	first strand
Strand 2	T	9003	9012	anti-parallel
Strand 3	T	9047	9055	anti-parallel
Strand 4	T	9038	9044	anti-parallel
Strand 5	T	9094	9097	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8I98

Analysis of interatomic Contacts of Structural Units in PDB entry:
8I98