Analysis of interatomic Contacts of Structural Units in PDB entry:
8I9L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8I9L entry

There are 6 chains in PDB entry 8I9L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
LEU 4ASN 340
A
SER 6TYR 354
G
SER 8ARG 62
H
ASP 1LYS 248
C
TRP 18ILE 450
D
SER 1ARG 77
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8I9L. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
4 25Right-handed alpha
Helix 2
AA2
B
29 33Right-handed 310
Helix 3
AA3
A
8 32Right-handed alpha
Helix 4
AA4
A
45 53Right-handed alpha
Helix 5
AA5
A
208 217Right-handed 310
Helix 6
AA6
A
245 256Right-handed alpha
Helix 7
AA7
A
271 282Right-handed alpha
Helix 8
AA8
A
296 310Right-handed alpha
Helix 9
AA9
A
330 351Right-handed alpha
Helix 10
AB1
G
9 24Right-handed alpha
Helix 11
AB2
G
29 44Right-handed alpha
Helix 12
AB3
H
28 32Right-handed 310
Helix 13
AB4
H
53 56Right-handed 310
Helix 14
AB5
H
87 91Right-handed 310
Helix 15
AB6
H
220 224Right-handed 310
Helix 16
AB7
C
20 50Right-handed alpha
Helix 17
AB8
C
55 84Right-handed alpha
Helix 18
AB9
C
91 126Right-handed alpha
Helix 19
AC1
C
128 133Right-handed alpha
Helix 20
AC2
C
135 159Right-handed alpha
Helix 21
AC3
C
332 363Right-handed alpha
Helix 22
AC4
C
374 390Right-handed alpha
Helix 23
AC5
C
390 403Right-handed alpha
Helix 24
AC6
C
407 436Right-handed alpha
Helix 25
AC7
C
439 450Right-handed alpha
Helix 26
AC8
D
3 13Right-handed alpha
Helix 27
AC9
D
45 48Right-handed 310
Helix 28
AD1
D
49 71Right-handed alpha
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There are 14 sheets in PDB entry 8I9L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
47 51first strand
Strand 2
B
336 339anti-parallel
Strand 3
B
327 331anti-parallel
Strand 4
B
315 320anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
58 63first strand
Strand 2
B
69 74anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
89 94anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
100 105first strand
Strand 2
B
111 116anti-parallel
Strand 3
B
120 125anti-parallel
Strand 4
B
134 140anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
146 151first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
165 170anti-parallel
Strand 4
B
178 181anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
191 192first strand
Strand 2
B
198 202anti-parallel
Strand 3
B
208 212anti-parallel
Strand 4
B
220 222anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
229 234first strand
Strand 2
B
240 245anti-parallel
Strand 3
B
250 254anti-parallel
Strand 4
B
259 264anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
273 275first strand
Strand 2
B
284 289anti-parallel
Strand 3
B
294 298anti-parallel
Strand 4
B
303 308anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
186 192first strand
Strand 2
A
195 201anti-parallel
Strand 3
A
33 40parallel
Strand 4
A
221 227parallel
Strand 5
A
265 270parallel
Strand 6
A
320 323parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 7first strand
Strand 2
H
17 25anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
11 12first strand
Strand 2
H
115 119parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
35 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
11 12first strand
Strand 2
H
115 119parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
110 111anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
140 141first strand
Strand 2
H
155 161anti-parallel
Strand 3
H
211 216anti-parallel
Strand 4
H
203 208anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
146 149first strand
Strand 2
H
243 247parallel
Strand 3
H
226 231anti-parallel
Strand 4
H
174 179anti-parallel
Strand 5
H
185 190anti-parallel
Strand 6
H
194 195anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
162 163first strand
Strand 2
C
172 173anti-parallel
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