Analysis of interatomic Contacts of Structural Units in PDB entry:
8I9O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8I9O entry

There are 4 chains in PDB entry 8I9O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	ALA 544
B	THR 2	ALA 544
C	THR 2	ALA 544
D	THR 2	ALA 544

There are 92 helices in PDB entry 8I9O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	32	Right-handed alpha
Helix 2	AA2	A	70	80	Right-handed alpha
Helix 3	AA3	A	85	87	Right-handed 310
Helix 4	AA4	A	92	106	Right-handed alpha
Helix 5	AA5	A	114	132	Right-handed alpha
Helix 6	AA6	A	147	149	Right-handed 310
Helix 7	AA7	A	150	165	Right-handed alpha
Helix 8	AA8	A	188	202	Right-handed alpha
Helix 9	AA9	A	217	229	Right-handed alpha
Helix 10	AB1	A	231	233	Right-handed 310
Helix 11	AB2	A	243	245	Right-handed 310
Helix 12	AB3	A	246	254	Right-handed alpha
Helix 13	AB4	A	255	264	Right-handed alpha
Helix 14	AB5	A	273	285	Right-handed alpha
Helix 15	AB6	A	301	304	Right-handed 310
Helix 16	AB7	A	305	319	Right-handed alpha
Helix 17	AB8	A	330	336	Right-handed alpha
Helix 18	AB9	A	357	372	Right-handed alpha
Helix 19	AC1	A	379	393	Right-handed alpha
Helix 20	AC2	A	452	459	Right-handed alpha
Helix 21	AC3	A	477	485	Right-handed alpha
Helix 22	AC4	A	515	520	Right-handed 310
Helix 23	AC5	A	526	543	Right-handed alpha
Helix 24	AC6	B	17	32	Right-handed alpha
Helix 25	AC7	B	70	80	Right-handed alpha
Helix 26	AC8	B	85	87	Right-handed 310
Helix 27	AC9	B	92	106	Right-handed alpha
Helix 28	AD1	B	114	132	Right-handed alpha
Helix 29	AD2	B	147	149	Right-handed 310
Helix 30	AD3	B	150	165	Right-handed alpha
Helix 31	AD4	B	188	202	Right-handed alpha
Helix 32	AD5	B	217	229	Right-handed alpha
Helix 33	AD6	B	231	233	Right-handed 310
Helix 34	AD7	B	243	245	Right-handed 310
Helix 35	AD8	B	246	254	Right-handed alpha
Helix 36	AD9	B	255	264	Right-handed alpha
Helix 37	AE1	B	273	285	Right-handed alpha
Helix 38	AE2	B	301	304	Right-handed 310
Helix 39	AE3	B	305	319	Right-handed alpha
Helix 40	AE4	B	330	336	Right-handed alpha
Helix 41	AE5	B	357	372	Right-handed alpha
Helix 42	AE6	B	379	393	Right-handed alpha
Helix 43	AE7	B	452	459	Right-handed alpha
Helix 44	AE8	B	477	485	Right-handed alpha
Helix 45	AE9	B	515	520	Right-handed 310
Helix 46	AF1	B	526	543	Right-handed alpha
Helix 47	AF2	C	17	32	Right-handed alpha
Helix 48	AF3	C	70	80	Right-handed alpha
Helix 49	AF4	C	85	87	Right-handed 310
Helix 50	AF5	C	92	106	Right-handed alpha
Helix 51	AF6	C	114	132	Right-handed alpha
Helix 52	AF7	C	147	149	Right-handed 310
Helix 53	AF8	C	150	165	Right-handed alpha
Helix 54	AF9	C	188	202	Right-handed alpha
Helix 55	AG1	C	217	229	Right-handed alpha
Helix 56	AG2	C	231	233	Right-handed 310
Helix 57	AG3	C	243	245	Right-handed 310
Helix 58	AG4	C	246	254	Right-handed alpha
Helix 59	AG5	C	255	264	Right-handed alpha
Helix 60	AG6	C	273	285	Right-handed alpha
Helix 61	AG7	C	301	304	Right-handed 310
Helix 62	AG8	C	305	319	Right-handed alpha
Helix 63	AG9	C	330	336	Right-handed alpha
Helix 64	AH1	C	357	372	Right-handed alpha
Helix 65	AH2	C	379	393	Right-handed alpha
Helix 66	AH3	C	452	459	Right-handed alpha
Helix 67	AH4	C	477	485	Right-handed alpha
Helix 68	AH5	C	515	520	Right-handed 310
Helix 69	AH6	C	526	543	Right-handed alpha
Helix 70	AH7	D	17	32	Right-handed alpha
Helix 71	AH8	D	70	80	Right-handed alpha
Helix 72	AH9	D	85	87	Right-handed 310
Helix 73	AI1	D	92	106	Right-handed alpha
Helix 74	AI2	D	114	132	Right-handed alpha
Helix 75	AI3	D	147	149	Right-handed 310
Helix 76	AI4	D	150	165	Right-handed alpha
Helix 77	AI5	D	188	202	Right-handed alpha
Helix 78	AI6	D	217	229	Right-handed alpha
Helix 79	AI7	D	231	233	Right-handed 310
Helix 80	AI8	D	243	245	Right-handed 310
Helix 81	AI9	D	246	254	Right-handed alpha
Helix 82	AJ1	D	255	264	Right-handed alpha
Helix 83	AJ2	D	273	285	Right-handed alpha
Helix 84	AJ3	D	301	304	Right-handed 310
Helix 85	AJ4	D	305	319	Right-handed alpha
Helix 86	AJ5	D	330	336	Right-handed alpha
Helix 87	AJ6	D	357	372	Right-handed alpha
Helix 88	AJ7	D	379	393	Right-handed alpha
Helix 89	AJ8	D	452	459	Right-handed alpha
Helix 90	AJ9	D	477	485	Right-handed alpha
Helix 91	AK1	D	515	520	Right-handed 310
Helix 92	AK2	D	526	543	Right-handed alpha

There are 20 sheets in PDB entry 8I9O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	36	42	parallel
Strand 3	A	136	144	parallel
Strand 4	A	4	10	parallel
Strand 5	A	169	176	parallel
Strand 6	A	207	212	parallel
Strand 7	A	235	239	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	68	69	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	A	185	186	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	329	first strand
Strand 2	A	289	296	parallel
Strand 3	A	346	349	parallel
Strand 4	A	375	378	parallel
Strand 5	A	509	512	parallel
Strand 6	A	498	502	anti-parallel
Strand 7	A	487	491	anti-parallel
Strand 8	A	440	448	anti-parallel
Strand 9	A	462	469	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	411	414	parallel
Strand 3	A	472	473	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	36	42	parallel
Strand 3	B	136	144	parallel
Strand 4	B	4	10	parallel
Strand 5	B	169	176	parallel
Strand 6	B	207	212	parallel
Strand 7	B	235	239	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	68	69	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	180	first strand
Strand 2	B	185	186	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	329	first strand
Strand 2	B	289	296	parallel
Strand 3	B	346	349	parallel
Strand 4	B	375	378	parallel
Strand 5	B	509	512	parallel
Strand 6	B	498	502	anti-parallel
Strand 7	B	487	491	anti-parallel
Strand 8	B	440	448	anti-parallel
Strand 9	B	462	469	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	401	first strand
Strand 2	B	411	414	parallel
Strand 3	B	472	473	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	91	first strand
Strand 2	C	36	42	parallel
Strand 3	C	136	144	parallel
Strand 4	C	4	10	parallel
Strand 5	C	169	176	parallel
Strand 6	C	207	212	parallel
Strand 7	C	235	239	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	68	69	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	C	185	186	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	329	first strand
Strand 2	C	289	296	parallel
Strand 3	C	346	349	parallel
Strand 4	C	375	378	parallel
Strand 5	C	509	512	parallel
Strand 6	C	498	502	anti-parallel
Strand 7	C	487	491	anti-parallel
Strand 8	C	440	448	anti-parallel
Strand 9	C	462	469	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	401	first strand
Strand 2	C	411	414	parallel
Strand 3	C	472	473	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	91	first strand
Strand 2	D	36	42	parallel
Strand 3	D	136	144	parallel
Strand 4	D	4	10	parallel
Strand 5	D	169	176	parallel
Strand 6	D	207	212	parallel
Strand 7	D	235	239	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	68	69	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	180	first strand
Strand 2	D	185	186	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	322	329	first strand
Strand 2	D	289	296	parallel
Strand 3	D	346	349	parallel
Strand 4	D	375	378	parallel
Strand 5	D	509	512	parallel
Strand 6	D	498	502	anti-parallel
Strand 7	D	487	491	anti-parallel
Strand 8	D	440	448	anti-parallel
Strand 9	D	462	469	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	400	401	first strand
Strand 2	D	411	414	parallel
Strand 3	D	472	473	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8I9O

Analysis of interatomic Contacts of Structural Units in PDB entry:
8I9O