Analysis of interatomic Contacts of Structural Units in PDB entry:
8IAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IAD entry

There are 2 chains in PDB entry 8IAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 54ASP 767
B
 ILE 54ASP 767
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 8IAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 74Right-handed 310
Helix 2
AA2
A
75 124Right-handed alpha
Helix 3
AA3
A
127 154Right-handed alpha
Helix 4
AA4
A
161 169Right-handed alpha
Helix 5
AA5
A
180 195Right-handed alpha
Helix 6
AA6
A
204 219Right-handed alpha
Helix 7
AA7
A
229 236Right-handed 310
Helix 8
AA8
A
238 258Right-handed alpha
Helix 9
AA9
A
259 270Right-handed alpha
Helix 10
AB1
A
281 301Right-handed alpha
Helix 11
AB2
A
302 305Right-handed 310
Helix 12
AB3
A
331 363Right-handed alpha
Helix 13
AB4
A
368 388Right-handed alpha
Helix 14
AB5
A
389 391Right-handed 310
Helix 15
AB6
A
434 443Right-handed alpha
Helix 16
AB7
A
452 471Right-handed alpha
Helix 17
AB8
A
479 499Right-handed alpha
Helix 18
AB9
A
505 523Right-handed alpha
Helix 19
AC1
A
525 537Right-handed alpha
Helix 20
AC2
A
538 540Right-handed 310
Helix 21
AC3
A
541 557Right-handed alpha
Helix 22
AC4
A
563 571Right-handed alpha
Helix 23
AC5
A
588 594Right-handed alpha
Helix 24
AC6
A
607 618Right-handed alpha
Helix 25
AC7
A
643 652Right-handed alpha
Helix 26
AC8
A
663 671Right-handed alpha
Helix 27
AC9
A
674 678Right-handed 310
Helix 28
AD1
A
691 695Right-handed 310
Helix 29
AD2
A
715 727Right-handed alpha
Helix 30
AD3
A
750 755Right-handed alpha
Helix 31
AD4
A
755 763Right-handed alpha
Helix 32
AD5
B
70 74Right-handed 310
Helix 33
AD6
B
75 124Right-handed alpha
Helix 34
AD7
B
127 154Right-handed alpha
Helix 35
AD8
B
161 169Right-handed alpha
Helix 36
AD9
B
180 195Right-handed alpha
Helix 37
AE1
B
204 219Right-handed alpha
Helix 38
AE2
B
229 236Right-handed 310
Helix 39
AE3
B
238 258Right-handed alpha
Helix 40
AE4
B
259 270Right-handed alpha
Helix 41
AE5
B
281 301Right-handed alpha
Helix 42
AE6
B
302 305Right-handed 310
Helix 43
AE7
B
331 363Right-handed alpha
Helix 44
AE8
B
368 388Right-handed alpha
Helix 45
AE9
B
389 391Right-handed 310
Helix 46
AF1
B
434 443Right-handed alpha
Helix 47
AF2
B
452 471Right-handed alpha
Helix 48
AF3
B
479 499Right-handed alpha
Helix 49
AF4
B
505 523Right-handed alpha
Helix 50
AF5
B
525 537Right-handed alpha
Helix 51
AF6
B
538 540Right-handed 310
Helix 52
AF7
B
541 557Right-handed alpha
Helix 53
AF8
B
563 571Right-handed alpha
Helix 54
AF9
B
588 594Right-handed alpha
Helix 55
AG1
B
607 618Right-handed alpha
Helix 56
AG2
B
643 652Right-handed alpha
Helix 57
AG3
B
663 671Right-handed alpha
Helix 58
AG4
B
674 678Right-handed 310
Helix 59
AG5
B
691 695Right-handed 310
Helix 60
AG6
B
715 727Right-handed alpha
Helix 61
AG7
B
750 755Right-handed alpha
Helix 62
AG8
B
755 763Right-handed alpha
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There are 6 sheets in PDB entry 8IAD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 396first strand
Strand 2
A
423 424anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
602 603first strand
Strand 2
A
622 626parallel
Strand 3
A
639 642anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
709 711first strand
Strand 2
A
731 734parallel
Strand 3
A
748 749anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 396first strand
Strand 2
B
423 424anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
602 603first strand
Strand 2
B
622 626parallel
Strand 3
B
639 642anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
709 711first strand
Strand 2
B
731 734parallel
Strand 3
B
748 749anti-parallel
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