Analysis of interatomic Contacts of Structural Units in PDB entry:
8IB2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8IB2 entry

There are 6 chains in PDB entry 8IB2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
5	GLN 340	PHE 405
B	ASP 3	PHE 375
C	ASP 3	PHE 375
D	ASP 3	PHE 375
E	ASP 3	PHE 375
F	ASP 3	PHE 375

There are103 helices in PDB entry 8IB2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	5	344	349	Right-handed alpha
Helix 2	AA2	5	372	381	Right-handed alpha
Helix 3	AA3	5	383	390	Right-handed alpha
Helix 4	AA4	5	391	402	Right-handed alpha
Helix 5	AA5	B	55	61	Right-handed alpha
Helix 6	AA6	B	78	93	Right-handed alpha
Helix 7	AA7	B	112	127	Right-handed alpha
Helix 8	AA8	B	137	146	Right-handed alpha
Helix 9	AA9	B	181	193	Right-handed alpha
Helix 10	AB1	B	202	217	Right-handed alpha
Helix 11	AB2	B	222	233	Right-handed alpha
Helix 12	AB3	B	251	255	Right-handed 310
Helix 13	AB4	B	258	263	Right-handed alpha
Helix 14	AB5	B	273	284	Right-handed alpha
Helix 15	AB6	B	289	296	Right-handed alpha
Helix 16	AB7	B	302	306	Right-handed 310
Helix 17	AB8	B	308	321	Right-handed alpha
Helix 18	AB9	B	334	336	Right-handed 310
Helix 19	AC1	B	337	347	Right-handed alpha
Helix 20	AC2	B	351	355	Right-handed 310
Helix 21	AC3	B	359	366	Right-handed alpha
Helix 22	AC4	B	368	374	Right-handed alpha
Helix 23	AC5	C	55	61	Right-handed alpha
Helix 24	AC6	C	79	92	Right-handed alpha
Helix 25	AC7	C	97	101	Right-handed 310
Helix 26	AC8	C	113	126	Right-handed alpha
Helix 27	AC9	C	137	146	Right-handed alpha
Helix 28	AD1	C	172	175	Right-handed 310
Helix 29	AD2	C	181	194	Right-handed alpha
Helix 30	AD3	C	195	197	Right-handed 310
Helix 31	AD4	C	202	216	Right-handed alpha
Helix 32	AD5	C	222	233	Right-handed alpha
Helix 33	AD6	C	252	260	Right-handed alpha
Helix 34	AD7	C	273	284	Right-handed alpha
Helix 35	AD8	C	289	295	Right-handed alpha
Helix 36	AD9	C	302	306	Right-handed 310
Helix 37	AE1	C	308	321	Right-handed alpha
Helix 38	AE2	C	334	336	Right-handed 310
Helix 39	AE3	C	337	347	Right-handed alpha
Helix 40	AE4	C	351	356	Right-handed 310
Helix 41	AE5	C	359	366	Right-handed alpha
Helix 42	AE6	C	369	374	Right-handed alpha
Helix 43	AE7	D	55	61	Right-handed alpha
Helix 44	AE8	D	79	92	Right-handed alpha
Helix 45	AE9	D	97	101	Right-handed 310
Helix 46	AF1	D	112	126	Right-handed alpha
Helix 47	AF2	D	137	146	Right-handed alpha
Helix 48	AF3	D	172	175	Right-handed 310
Helix 49	AF4	D	181	193	Right-handed alpha
Helix 50	AF5	D	202	204	Right-handed 310
Helix 51	AF6	D	205	216	Right-handed alpha
Helix 52	AF7	D	222	233	Right-handed alpha
Helix 53	AF8	D	251	256	Right-handed 310
Helix 54	AF9	D	257	262	Right-handed 310
Helix 55	AG1	D	273	284	Right-handed alpha
Helix 56	AG2	D	289	295	Right-handed alpha
Helix 57	AG3	D	301	306	Right-handed 310
Helix 58	AG4	D	308	321	Right-handed alpha
Helix 59	AG5	D	334	336	Right-handed 310
Helix 60	AG6	D	337	347	Right-handed alpha
Helix 61	AG7	D	348	356	Right-handed 310
Helix 62	AG8	D	359	366	Right-handed alpha
Helix 63	AG9	D	369	374	Right-handed alpha
Helix 64	AH1	E	55	61	Right-handed alpha
Helix 65	AH2	E	78	93	Right-handed alpha
Helix 66	AH3	E	113	126	Right-handed alpha
Helix 67	AH4	E	137	146	Right-handed alpha
Helix 68	AH5	E	172	175	Right-handed 310
Helix 69	AH6	E	181	194	Right-handed alpha
Helix 70	AH7	E	202	216	Right-handed alpha
Helix 71	AH8	E	222	233	Right-handed alpha
Helix 72	AH9	E	252	257	Right-handed alpha
Helix 73	AI1	E	258	261	Right-handed 310
Helix 74	AI2	E	273	284	Right-handed alpha
Helix 75	AI3	E	289	295	Right-handed alpha
Helix 76	AI4	E	301	306	Right-handed 310
Helix 77	AI5	E	308	321	Right-handed alpha
Helix 78	AI6	E	337	347	Right-handed alpha
Helix 79	AI7	E	348	349	Right-handed 310
Helix 80	AI8	E	350	355	Right-handed 310
Helix 81	AI9	E	359	366	Right-handed alpha
Helix 82	AJ1	E	368	374	Right-handed alpha
Helix 83	AJ2	F	55	61	Right-handed alpha
Helix 84	AJ3	F	79	92	Right-handed alpha
Helix 85	AJ4	F	97	101	Right-handed 310
Helix 86	AJ5	F	112	126	Right-handed alpha
Helix 87	AJ6	F	137	146	Right-handed alpha
Helix 88	AJ7	F	172	175	Right-handed 310
Helix 89	AJ8	F	181	193	Right-handed alpha
Helix 90	AJ9	F	202	216	Right-handed alpha
Helix 91	AK1	F	222	233	Right-handed alpha
Helix 92	AK2	F	251	256	Right-handed 310
Helix 93	AK3	F	257	262	Right-handed 310
Helix 94	AK4	F	263	267	Right-handed 310
Helix 95	AK5	F	273	284	Right-handed alpha
Helix 96	AK6	F	289	296	Right-handed alpha
Helix 97	AK7	F	301	306	Right-handed 310
Helix 98	AK8	F	308	321	Right-handed alpha
Helix 99	AK9	F	334	336	Right-handed 310
Helix 100	AL1	F	337	349	Right-handed alpha
Helix 101	AL2	F	351	355	Right-handed 310
Helix 102	AL3	F	359	366	Right-handed alpha
Helix 103	AL4	F	368	374	Right-handed alpha

There are 30 sheets in PDB entry 8IB2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	149	155	anti-parallel
Strand 4	B	297	299	parallel
Strand 5	B	329	330	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	169	170	anti-parallel
Strand 4	D	41	42	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	241	first strand
Strand 2	B	247	249	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	169	170	anti-parallel
Strand 4	E	41	42	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	241	first strand
Strand 2	C	247	249	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	20	anti-parallel
Strand 3	D	8	11	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	176	178	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	298	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	241	first strand
Strand 2	D	247	249	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	16	21	anti-parallel
Strand 3	E	8	12	anti-parallel
Strand 4	E	103	107	parallel
Strand 5	E	131	136	parallel
Strand 6	E	357	358	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	35	38	anti-parallel
Strand 3	E	65	68	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	75	76	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	176	178	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	150	155	anti-parallel
Strand 4	E	297	300	parallel
Strand 5	E	329	330	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	239	241	first strand
Strand 2	E	247	249	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	32	first strand
Strand 2	F	16	21	anti-parallel
Strand 3	F	8	12	anti-parallel
Strand 4	F	103	107	parallel
Strand 5	F	131	136	parallel
Strand 6	F	357	358	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	54	first strand
Strand 2	F	35	38	anti-parallel
Strand 3	F	65	68	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	72	first strand
Strand 2	F	75	76	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	170	first strand
Strand 2	F	160	166	anti-parallel
Strand 3	F	176	178	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	170	first strand
Strand 2	F	160	166	anti-parallel
Strand 3	F	150	155	anti-parallel
Strand 4	F	297	300	parallel
Strand 5	F	329	330	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	239	241	first strand
Strand 2	F	247	249	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8IB2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8IB2