Analysis of interatomic Contacts of Structural Units in PDB entry:
8IBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IBJ entry

There is 1 chain in PDB entry 8IBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 24TYR 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8IBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 39Right-handed alpha
Helix 2
AA2
A
52 56Right-handed 310
Helix 3
AA3
A
85 88Right-handed 310
Helix 4
AA4
A
89 98Right-handed alpha
Helix 5
AA5
A
114 133Right-handed alpha
Helix 6
AA6
A
155 168Right-handed alpha
Helix 7
AA7
A
184 188Right-handed 310
Helix 8
AA8
A
211 218Right-handed alpha
Helix 9
AA9
A
233 237Right-handed 310
Helix 10
AB1
A
243 260Right-handed alpha
Helix 11
AB2
A
262 264Right-handed 310
Helix 12
AB3
A
265 270Right-handed alpha
Helix 13
AB4
A
271 280Right-handed alpha
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There are 2 sheets in PDB entry 8IBJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 51first strand
Strand 2
A
62 67anti-parallel
Strand 3
A
101 106anti-parallel
Strand 4
A
73 79parallel
Strand 5
A
144 154parallel
Strand 6
A
173 177parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 199first strand
Strand 2
A
224 229parallel
Strand 3
A
283 288anti-parallel
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