Analysis of interatomic Contacts of Structural Units in PDB entry:
8IBS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8IBS entry

There are 6 chains in PDB entry 8IBS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 691
B	MET 1	LEU 691
C	MET 1	LEU 691
D	MET 1	LEU 691
E	MET 1	LEU 691
F	MET 1	LEU 691

There are148 helices in PDB entry 8IBS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	30	Right-handed 310
Helix 2	AA2	A	31	32	Right-handed 310
Helix 3	AA3	A	33	46	Right-handed alpha
Helix 4	AA4	A	56	61	Right-handed alpha
Helix 5	AA5	A	69	82	Right-handed alpha
Helix 6	AA6	A	96	103	Right-handed alpha
Helix 7	AA7	A	104	107	Right-handed 310
Helix 8	AA8	A	128	147	Right-handed alpha
Helix 9	AA9	A	170	186	Right-handed alpha
Helix 10	AB1	A	187	196	Right-handed alpha
Helix 11	AB2	A	198	202	Right-handed 310
Helix 12	AB3	A	206	210	Right-handed 310
Helix 13	AB4	A	223	251	Right-handed alpha
Helix 14	AB5	A	271	276	Right-handed alpha
Helix 15	AB6	A	290	292	Right-handed 310
Helix 16	AB7	A	293	309	Right-handed alpha
Helix 17	AB8	A	336	348	Right-handed alpha
Helix 18	AB9	A	380	399	Right-handed alpha
Helix 19	AC1	A	416	424	Right-handed alpha
Helix 20	AC2	A	436	449	Right-handed alpha
Helix 21	AC3	A	461	465	Right-handed 310
Helix 22	AC4	A	477	490	Right-handed alpha
Helix 23	AC5	A	518	523	Right-handed alpha
Helix 24	AC6	A	574	578	Right-handed 310
Helix 25	AC7	A	602	618	Right-handed alpha
Helix 26	AC8	B	26	30	Right-handed 310
Helix 27	AC9	B	31	32	Right-handed 310
Helix 28	AD1	B	33	46	Right-handed alpha
Helix 29	AD2	B	56	61	Right-handed alpha
Helix 30	AD3	B	69	82	Right-handed alpha
Helix 31	AD4	B	96	103	Right-handed alpha
Helix 32	AD5	B	104	107	Right-handed 310
Helix 33	AD6	B	128	147	Right-handed alpha
Helix 34	AD7	B	170	186	Right-handed alpha
Helix 35	AD8	B	187	196	Right-handed alpha
Helix 36	AD9	B	198	202	Right-handed 310
Helix 37	AE1	B	206	210	Right-handed 310
Helix 38	AE2	B	223	251	Right-handed alpha
Helix 39	AE3	B	271	276	Right-handed alpha
Helix 40	AE4	B	290	292	Right-handed 310
Helix 41	AE5	B	293	309	Right-handed alpha
Helix 42	AE6	B	336	348	Right-handed alpha
Helix 43	AE7	B	380	399	Right-handed alpha
Helix 44	AE8	B	416	424	Right-handed alpha
Helix 45	AE9	B	436	449	Right-handed alpha
Helix 46	AF1	B	461	465	Right-handed 310
Helix 47	AF2	B	477	490	Right-handed alpha
Helix 48	AF3	B	518	523	Right-handed alpha
Helix 49	AF4	B	574	578	Right-handed 310
Helix 50	AF5	B	602	619	Right-handed alpha
Helix 51	AF6	C	26	30	Right-handed 310
Helix 52	AF7	C	31	32	Right-handed 310
Helix 53	AF8	C	33	46	Right-handed alpha
Helix 54	AF9	C	56	61	Right-handed alpha
Helix 55	AG1	C	69	82	Right-handed alpha
Helix 56	AG2	C	96	103	Right-handed alpha
Helix 57	AG3	C	104	107	Right-handed 310
Helix 58	AG4	C	128	147	Right-handed alpha
Helix 59	AG5	C	170	186	Right-handed alpha
Helix 60	AG6	C	187	196	Right-handed alpha
Helix 61	AG7	C	198	202	Right-handed 310
Helix 62	AG8	C	206	210	Right-handed 310
Helix 63	AG9	C	223	253	Right-handed alpha
Helix 64	AH1	C	271	276	Right-handed alpha
Helix 65	AH2	C	290	292	Right-handed 310
Helix 66	AH3	C	293	309	Right-handed alpha
Helix 67	AH4	C	336	348	Right-handed alpha
Helix 68	AH5	C	380	399	Right-handed alpha
Helix 69	AH6	C	416	423	Right-handed alpha
Helix 70	AH7	C	436	449	Right-handed alpha
Helix 71	AH8	C	461	465	Right-handed 310
Helix 72	AH9	C	477	490	Right-handed alpha
Helix 73	AI1	C	518	523	Right-handed alpha
Helix 74	AI2	C	574	578	Right-handed 310
Helix 75	AI3	C	602	619	Right-handed alpha
Helix 76	AI4	D	26	31	Right-handed 310
Helix 77	AI5	D	32	46	Right-handed alpha
Helix 78	AI6	D	56	61	Right-handed alpha
Helix 79	AI7	D	69	82	Right-handed alpha
Helix 80	AI8	D	96	103	Right-handed alpha
Helix 81	AI9	D	104	107	Right-handed 310
Helix 82	AJ1	D	128	147	Right-handed alpha
Helix 83	AJ2	D	170	186	Right-handed alpha
Helix 84	AJ3	D	187	196	Right-handed alpha
Helix 85	AJ4	D	198	202	Right-handed 310
Helix 86	AJ5	D	206	210	Right-handed 310
Helix 87	AJ6	D	223	251	Right-handed alpha
Helix 88	AJ7	D	271	276	Right-handed alpha
Helix 89	AJ8	D	290	292	Right-handed 310
Helix 90	AJ9	D	293	309	Right-handed alpha
Helix 91	AK1	D	336	348	Right-handed alpha
Helix 92	AK2	D	380	399	Right-handed alpha
Helix 93	AK3	D	416	424	Right-handed alpha
Helix 94	AK4	D	436	449	Right-handed alpha
Helix 95	AK5	D	461	465	Right-handed 310
Helix 96	AK6	D	477	490	Right-handed alpha
Helix 97	AK7	D	518	523	Right-handed alpha
Helix 98	AK8	D	574	578	Right-handed 310
Helix 99	AK9	D	602	619	Right-handed alpha
Helix 100	AL1	E	26	30	Right-handed 310
Helix 101	AL2	E	31	32	Right-handed 310
Helix 102	AL3	E	33	46	Right-handed alpha
Helix 103	AL4	E	56	61	Right-handed alpha
Helix 104	AL5	E	69	82	Right-handed alpha
Helix 105	AL6	E	96	103	Right-handed alpha
Helix 106	AL7	E	104	107	Right-handed 310
Helix 107	AL8	E	128	147	Right-handed alpha
Helix 108	AL9	E	170	186	Right-handed alpha
Helix 109	AM1	E	187	196	Right-handed alpha
Helix 110	AM2	E	198	202	Right-handed 310
Helix 111	AM3	E	206	210	Right-handed 310
Helix 112	AM4	E	223	253	Right-handed alpha
Helix 113	AM5	E	271	276	Right-handed alpha
Helix 114	AM6	E	290	292	Right-handed 310
Helix 115	AM7	E	293	309	Right-handed alpha
Helix 116	AM8	E	336	348	Right-handed alpha
Helix 117	AM9	E	380	399	Right-handed alpha
Helix 118	AN1	E	416	423	Right-handed alpha
Helix 119	AN2	E	436	449	Right-handed alpha
Helix 120	AN3	E	461	465	Right-handed 310
Helix 121	AN4	E	477	490	Right-handed alpha
Helix 122	AN5	E	518	523	Right-handed alpha
Helix 123	AN6	E	574	578	Right-handed 310
Helix 124	AN7	E	602	619	Right-handed alpha
Helix 125	AN8	F	26	31	Right-handed 310
Helix 126	AN9	F	32	46	Right-handed alpha
Helix 127	AO1	F	56	61	Right-handed alpha
Helix 128	AO2	F	69	82	Right-handed alpha
Helix 129	AO3	F	96	103	Right-handed alpha
Helix 130	AO4	F	104	107	Right-handed 310
Helix 131	AO5	F	128	147	Right-handed alpha
Helix 132	AO6	F	170	186	Right-handed alpha
Helix 133	AO7	F	187	195	Right-handed alpha
Helix 134	AO8	F	198	202	Right-handed 310
Helix 135	AO9	F	206	210	Right-handed 310
Helix 136	AP1	F	223	253	Right-handed alpha
Helix 137	AP2	F	271	276	Right-handed alpha
Helix 138	AP3	F	290	292	Right-handed 310
Helix 139	AP4	F	293	309	Right-handed alpha
Helix 140	AP5	F	336	348	Right-handed alpha
Helix 141	AP6	F	380	399	Right-handed alpha
Helix 142	AP7	F	416	424	Right-handed alpha
Helix 143	AP8	F	436	449	Right-handed alpha
Helix 144	AP9	F	461	465	Right-handed 310
Helix 145	AQ1	F	477	490	Right-handed alpha
Helix 146	AQ2	F	518	523	Right-handed alpha
Helix 147	AQ3	F	574	578	Right-handed 310
Helix 148	AQ4	F	602	619	Right-handed alpha

There are 31 sheets in PDB entry 8IBS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	258	first strand
Strand 2	A	152	156	parallel
Strand 3	A	85	89	parallel
Strand 4	A	49	52	parallel
Strand 5	A	20	25	parallel
Strand 6	A	350	355	parallel
Strand 7	A	314	318	parallel
Strand 8	A	283	285	parallel
Strand 9	A	260	261	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	406	first strand
Strand 2	A	631	637	anti-parallel
Strand 3	A	644	650	anti-parallel
Strand 4	A	678	690	anti-parallel
Strand 5	A	656	659	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	406	first strand
Strand 2	A	631	637	anti-parallel
Strand 3	A	644	650	anti-parallel
Strand 4	A	678	690	anti-parallel
Strand 5	A	663	673	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	457	first strand
Strand 2	A	411	415	parallel
Strand 3	A	467	470	parallel
Strand 4	A	493	497	parallel
Strand 5	A	593	598	parallel
Strand 6	A	583	590	anti-parallel
Strand 7	A	565	572	anti-parallel
Strand 8	A	543	545	anti-parallel
Strand 9	A	550	551	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	524	531	first strand
Strand 2	A	554	561	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	258	first strand
Strand 2	B	152	156	parallel
Strand 3	B	85	89	parallel
Strand 4	B	49	52	parallel
Strand 5	B	20	25	parallel
Strand 6	B	350	355	parallel
Strand 7	B	314	318	parallel
Strand 8	B	283	285	parallel
Strand 9	B	260	261	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	406	first strand
Strand 2	B	631	637	anti-parallel
Strand 3	B	644	650	anti-parallel
Strand 4	B	678	690	anti-parallel
Strand 5	B	656	659	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	406	first strand
Strand 2	B	631	637	anti-parallel
Strand 3	B	644	650	anti-parallel
Strand 4	B	678	690	anti-parallel
Strand 5	B	663	673	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	457	first strand
Strand 2	B	411	415	parallel
Strand 3	B	467	470	parallel
Strand 4	B	493	497	parallel
Strand 5	B	593	598	parallel
Strand 6	B	583	590	anti-parallel
Strand 7	B	565	572	anti-parallel
Strand 8	B	543	545	anti-parallel
Strand 9	B	550	561	anti-parallel
Strand 10	B	524	531	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	457	first strand
Strand 2	B	411	415	parallel
Strand 3	B	467	470	parallel
Strand 4	B	493	497	parallel
Strand 5	B	593	598	parallel
Strand 6	B	583	590	anti-parallel
Strand 7	B	565	572	anti-parallel
Strand 8	B	543	545	anti-parallel
Strand 9	B	550	561	anti-parallel
Strand 10	B	600	601	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	258	first strand
Strand 2	C	152	156	parallel
Strand 3	C	85	89	parallel
Strand 4	C	49	52	parallel
Strand 5	C	20	25	parallel
Strand 6	C	350	355	parallel
Strand 7	C	314	318	parallel
Strand 8	C	283	285	parallel
Strand 9	C	260	261	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	405	406	first strand
Strand 2	C	631	637	anti-parallel
Strand 3	C	644	650	anti-parallel
Strand 4	C	678	690	anti-parallel
Strand 5	C	656	659	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	405	406	first strand
Strand 2	C	631	637	anti-parallel
Strand 3	C	644	650	anti-parallel
Strand 4	C	678	690	anti-parallel
Strand 5	C	663	673	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	454	457	first strand
Strand 2	C	411	415	parallel
Strand 3	C	467	470	parallel
Strand 4	C	493	497	parallel
Strand 5	C	593	598	parallel
Strand 6	C	583	590	anti-parallel
Strand 7	C	565	572	anti-parallel
Strand 8	C	543	545	anti-parallel
Strand 9	C	550	561	anti-parallel
Strand 10	C	524	531	anti-parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	454	457	first strand
Strand 2	C	411	415	parallel
Strand 3	C	467	470	parallel
Strand 4	C	493	497	parallel
Strand 5	C	593	598	parallel
Strand 6	C	583	590	anti-parallel
Strand 7	C	565	572	anti-parallel
Strand 8	C	543	545	anti-parallel
Strand 9	C	550	561	anti-parallel
Strand 10	C	600	601	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	258	first strand
Strand 2	D	152	156	parallel
Strand 3	D	85	89	parallel
Strand 4	D	49	52	parallel
Strand 5	D	20	24	parallel
Strand 6	D	350	355	parallel
Strand 7	D	314	318	parallel
Strand 8	D	283	285	parallel
Strand 9	D	260	261	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	406	first strand
Strand 2	D	631	637	anti-parallel
Strand 3	D	644	650	anti-parallel
Strand 4	D	678	690	anti-parallel
Strand 5	D	656	659	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	406	first strand
Strand 2	D	631	637	anti-parallel
Strand 3	D	644	650	anti-parallel
Strand 4	D	678	690	anti-parallel
Strand 5	D	663	673	anti-parallel

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There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	454	457	first strand
Strand 2	D	411	415	parallel
Strand 3	D	467	470	parallel
Strand 4	D	493	497	parallel
Strand 5	D	593	598	parallel
Strand 6	D	583	590	anti-parallel
Strand 7	D	565	572	anti-parallel
Strand 8	D	543	545	anti-parallel
Strand 9	D	550	561	anti-parallel
Strand 10	D	524	531	anti-parallel

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There are 10 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	454	457	first strand
Strand 2	D	411	415	parallel
Strand 3	D	467	470	parallel
Strand 4	D	493	497	parallel
Strand 5	D	593	598	parallel
Strand 6	D	583	590	anti-parallel
Strand 7	D	565	572	anti-parallel
Strand 8	D	543	545	anti-parallel
Strand 9	D	550	561	anti-parallel
Strand 10	D	600	601	anti-parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	257	258	first strand
Strand 2	E	152	156	parallel
Strand 3	E	85	89	parallel
Strand 4	E	49	52	parallel
Strand 5	E	20	25	parallel
Strand 6	E	350	355	parallel
Strand 7	E	314	318	parallel
Strand 8	E	283	285	parallel
Strand 9	E	260	261	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	405	406	first strand
Strand 2	E	631	637	anti-parallel
Strand 3	E	644	650	anti-parallel
Strand 4	E	678	690	anti-parallel
Strand 5	E	656	659	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	405	406	first strand
Strand 2	E	631	637	anti-parallel
Strand 3	E	644	650	anti-parallel
Strand 4	E	678	690	anti-parallel
Strand 5	E	663	673	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	454	457	first strand
Strand 2	E	411	415	parallel
Strand 3	E	467	470	parallel
Strand 4	E	493	497	parallel
Strand 5	E	593	598	parallel
Strand 6	E	583	590	anti-parallel
Strand 7	E	565	572	anti-parallel
Strand 8	E	543	545	anti-parallel
Strand 9	E	549	551	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	524	531	first strand
Strand 2	E	554	561	anti-parallel

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There are 9 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	257	258	first strand
Strand 2	F	152	156	parallel
Strand 3	F	85	89	parallel
Strand 4	F	49	52	parallel
Strand 5	F	20	25	parallel
Strand 6	F	350	355	parallel
Strand 7	F	314	318	parallel
Strand 8	F	283	285	parallel
Strand 9	F	260	261	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	405	406	first strand
Strand 2	F	631	637	anti-parallel
Strand 3	F	644	650	anti-parallel
Strand 4	F	678	690	anti-parallel
Strand 5	F	656	659	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	405	406	first strand
Strand 2	F	631	637	anti-parallel
Strand 3	F	644	650	anti-parallel
Strand 4	F	678	690	anti-parallel
Strand 5	F	663	673	anti-parallel

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There are 10 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	454	457	first strand
Strand 2	F	411	415	parallel
Strand 3	F	467	470	parallel
Strand 4	F	493	497	parallel
Strand 5	F	593	598	parallel
Strand 6	F	583	590	anti-parallel
Strand 7	F	565	572	anti-parallel
Strand 8	F	543	545	anti-parallel
Strand 9	F	549	555	anti-parallel
Strand 10	F	530	531	anti-parallel

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There are 10 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	454	457	first strand
Strand 2	F	411	415	parallel
Strand 3	F	467	470	parallel
Strand 4	F	493	497	parallel
Strand 5	F	593	598	parallel
Strand 6	F	583	590	anti-parallel
Strand 7	F	565	572	anti-parallel
Strand 8	F	543	545	anti-parallel
Strand 9	F	549	555	anti-parallel
Strand 10	F	600	601	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	524	526	first strand
Strand 2	F	558	561	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8IBS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8IBS