Analysis of interatomic Contacts of Structural Units in PDB entry:
8IBW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IBW entry

There are 4 chains in PDB entry 8IBW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 C 1 G 43
B
 C 18 G 60
C
 GLY 111SER 1107
D
 G 30 A 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8IBW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
123 135Right-handed alpha
Helix 2
AA2
C
135 143Right-handed alpha
Helix 3
AA3
C
153 172Right-handed alpha
Helix 4
AA4
C
175 183Right-handed alpha
Helix 5
AA5
C
184 187Right-handed 310
Helix 6
AA6
C
189 198Right-handed alpha
Helix 7
AA7
C
199 214Right-handed alpha
Helix 8
AA8
C
261 283Right-handed alpha
Helix 9
AA9
C
306 322Right-handed alpha
Helix 10
AB1
C
324 334Right-handed alpha
Helix 11
AB2
C
343 357Right-handed alpha
Helix 12
AB3
C
365 373Right-handed alpha
Helix 13
AB4
C
392 399Right-handed alpha
Helix 14
AB5
C
413 420Right-handed alpha
Helix 15
AB6
C
421 436Right-handed alpha
Helix 16
AB7
C
439 444Right-handed 310
Helix 17
AB8
C
458 460Right-handed 310
Helix 18
AB9
C
469 487Right-handed alpha
Helix 19
AC1
C
501 520Right-handed alpha
Helix 20
AC2
C
532 536Right-handed 310
Helix 21
AC3
C
538 549Right-handed alpha
Helix 22
AC4
C
552 565Right-handed alpha
Helix 23
AC5
C
592 608Right-handed alpha
Helix 24
AC6
C
636 655Right-handed alpha
Helix 25
AC7
C
719 730Right-handed alpha
Helix 26
AC8
C
733 744Right-handed alpha
Helix 27
AC9
C
744 756Right-handed alpha
Helix 28
AD1
C
759 779Right-handed alpha
Helix 29
AD2
C
785 791Right-handed alpha
Helix 30
AD3
C
802 817Right-handed alpha
Helix 31
AD4
C
818 821Right-handed 310
Helix 32
AD5
C
823 831Right-handed alpha
Helix 33
AD6
C
832 849Right-handed alpha
Helix 34
AD7
C
861 870Right-handed alpha
Helix 35
AD8
C
872 877Right-handed alpha
Helix 36
AD9
C
885 889Right-handed 310
Helix 37
AE1
C
899 911Right-handed alpha
Helix 38
AE2
C
916 921Right-handed alpha
Helix 39
AE3
C
943 950Right-handed alpha
Helix 40
AE4
C
953 974Right-handed alpha
Helix 41
AE5
C
1018 1032Right-handed alpha
Helix 42
AE6
C
1034 1045Right-handed alpha
Helix 43
AE7
C
1048 1052Right-handed 310
Helix 44
AE8
C
1066 1076Right-handed alpha
Helix 45
AE9
C
1080 1105Right-handed alpha
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There are 10 sheets in PDB entry 8IBW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
112 113first strand
Strand 2
C
120 121anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
448 451first strand
Strand 2
C
462 465anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
629 634first strand
Strand 2
C
523 529anti-parallel
Strand 3
C
664 668anti-parallel
Strand 4
C
693 694parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
567 568first strand
Strand 2
C
580 581anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
571 572first strand
Strand 2
C
575 576anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
614 616first strand
Strand 2
C
619 621anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
701 702first strand
Strand 2
C
707 708anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
851 852first strand
Strand 2
C
859 860anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
981 982first strand
Strand 2
C
997 998anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1007 1013first strand
Strand 2
C
1054 1060parallel
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