Analysis of interatomic Contacts of Structural Units in PDB entry:
8IBX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IBX entry

There are 4 chains in PDB entry 8IBX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 GLY 111SER 1107
B
 A 25 G 60
A
 C 1 C 33
D
 G 30 A 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8IBX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
123 135Right-handed alpha
Helix 2
AA2
C
135 143Right-handed alpha
Helix 3
AA3
C
153 172Right-handed alpha
Helix 4
AA4
C
175 183Right-handed alpha
Helix 5
AA5
C
189 197Right-handed alpha
Helix 6
AA6
C
199 214Right-handed alpha
Helix 7
AA7
C
261 283Right-handed alpha
Helix 8
AA8
C
306 324Right-handed alpha
Helix 9
AA9
C
324 334Right-handed alpha
Helix 10
AB1
C
347 357Right-handed alpha
Helix 11
AB2
C
365 374Right-handed alpha
Helix 12
AB3
C
392 399Right-handed alpha
Helix 13
AB4
C
413 420Right-handed alpha
Helix 14
AB5
C
421 436Right-handed alpha
Helix 15
AB6
C
439 444Right-handed alpha
Helix 16
AB7
C
458 462Right-handed 310
Helix 17
AB8
C
469 487Right-handed alpha
Helix 18
AB9
C
500 520Right-handed alpha
Helix 19
AC1
C
532 537Right-handed 310
Helix 20
AC2
C
538 550Right-handed alpha
Helix 21
AC3
C
552 565Right-handed alpha
Helix 22
AC4
C
592 606Right-handed alpha
Helix 23
AC5
C
636 655Right-handed alpha
Helix 24
AC6
C
719 730Right-handed alpha
Helix 25
AC7
C
733 744Right-handed alpha
Helix 26
AC8
C
744 756Right-handed alpha
Helix 27
AC9
C
759 779Right-handed alpha
Helix 28
AD1
C
786 791Right-handed alpha
Helix 29
AD2
C
802 817Right-handed alpha
Helix 30
AD3
C
823 831Right-handed alpha
Helix 31
AD4
C
832 849Right-handed alpha
Helix 32
AD5
C
861 872Right-handed alpha
Helix 33
AD6
C
873 879Right-handed 310
Helix 34
AD7
C
884 889Right-handed 310
Helix 35
AD8
C
899 911Right-handed alpha
Helix 36
AD9
C
916 921Right-handed alpha
Helix 37
AE1
C
928 932Right-handed 310
Helix 38
AE2
C
943 950Right-handed alpha
Helix 39
AE3
C
951 953Right-handed 310
Helix 40
AE4
C
954 976Right-handed alpha
Helix 41
AE5
C
1018 1032Right-handed alpha
Helix 42
AE6
C
1034 1045Right-handed alpha
Helix 43
AE7
C
1066 1076Right-handed alpha
Helix 44
AE8
C
1080 1085Right-handed alpha
Helix 45
AE9
C
1086 1105Right-handed alpha
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There are 10 sheets in PDB entry 8IBX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
112 113first strand
Strand 2
C
120 121anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
465 467first strand
Strand 2
C
445 448anti-parallel
Strand 3
C
567 570parallel
Strand 4
C
580 581anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
623 626first strand
Strand 2
C
629 634anti-parallel
Strand 3
C
524 528anti-parallel
Strand 4
C
664 666anti-parallel
Strand 5
C
693 694parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
614 616first strand
Strand 2
C
619 621anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
668 671first strand
Strand 2
C
676 679anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
686 687first strand
Strand 2
C
690 691anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
700 703first strand
Strand 2
C
706 709anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
851 852first strand
Strand 2
C
859 860anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
981 982first strand
Strand 2
C
997 998anti-parallel
Strand 3
C
1005 1013anti-parallel
Strand 4
C
1052 1060parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
986 987first strand
Strand 2
C
992 993anti-parallel
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