Analysis of interatomic Contacts of Structural Units in PDB entry:
8IBY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IBY entry

There are 2 chains in PDB entry 8IBY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 U 23 U 317
C
 THR 305SER 1107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8IBY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
305 324Right-handed alpha
Helix 2
AA2
C
324 335Right-handed alpha
Helix 3
AA3
C
347 352Right-handed alpha
Helix 4
AA4
C
365 373Right-handed alpha
Helix 5
AA5
C
393 399Right-handed alpha
Helix 6
AA6
C
414 420Right-handed alpha
Helix 7
AA7
C
421 436Right-handed alpha
Helix 8
AA8
C
439 444Right-handed alpha
Helix 9
AA9
C
458 460Right-handed 310
Helix 10
AB1
C
469 487Right-handed alpha
Helix 11
AB2
C
504 519Right-handed alpha
Helix 12
AB3
C
539 549Right-handed alpha
Helix 13
AB4
C
552 565Right-handed alpha
Helix 14
AB5
C
592 607Right-handed alpha
Helix 15
AB6
C
636 655Right-handed alpha
Helix 16
AB7
C
719 730Right-handed alpha
Helix 17
AB8
C
733 744Right-handed alpha
Helix 18
AB9
C
745 750Right-handed alpha
Helix 19
AC1
C
751 755Right-handed 310
Helix 20
AC2
C
759 779Right-handed alpha
Helix 21
AC3
C
786 791Right-handed alpha
Helix 22
AC4
C
802 816Right-handed alpha
Helix 23
AC5
C
817 821Right-handed 310
Helix 24
AC6
C
823 831Right-handed alpha
Helix 25
AC7
C
833 849Right-handed alpha
Helix 26
AC8
C
861 871Right-handed alpha
Helix 27
AC9
C
875 879Right-handed 310
Helix 28
AD1
C
884 889Right-handed 310
Helix 29
AD2
C
899 911Right-handed alpha
Helix 30
AD3
C
918 922Right-handed 310
Helix 31
AD4
C
928 932Right-handed 310
Helix 32
AD5
C
943 950Right-handed alpha
Helix 33
AD6
C
951 953Right-handed 310
Helix 34
AD7
C
954 976Right-handed alpha
Helix 35
AD8
C
1018 1032Right-handed alpha
Helix 36
AD9
C
1035 1045Right-handed alpha
Helix 37
AE1
C
1066 1077Right-handed alpha
Helix 38
AE2
C
1080 1105Right-handed alpha
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There are 8 sheets in PDB entry 8IBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
462 467first strand
Strand 2
C
446 451anti-parallel
Strand 3
C
569 570parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
623 624first strand
Strand 2
C
629 634anti-parallel
Strand 3
C
523 529anti-parallel
Strand 4
C
664 670anti-parallel
Strand 5
C
677 678anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
623 624first strand
Strand 2
C
629 634anti-parallel
Strand 3
C
523 529anti-parallel
Strand 4
C
664 670anti-parallel
Strand 5
C
693 694parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
537 538first strand
Strand 2
C
584 585anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
614 616first strand
Strand 2
C
619 621anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
686 687first strand
Strand 2
C
690 691anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
851 852first strand
Strand 2
C
859 860anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
979 982first strand
Strand 2
C
997 1001anti-parallel
Strand 3
C
1004 1013anti-parallel
Strand 4
C
1053 1060parallel
Strand 5
C
1064 1065anti-parallel
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