Analysis of interatomic Contacts of Structural Units in PDB entry:
8IC0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IC0 entry

There are 6 chains in PDB entry 8IC0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 21MET 322
B
 CYS 3PHE 354
C
 GLU 3ASN 340
D
 ALA 7GLU 63
E
 VAL 2LEU 235
F
 SER 1ALA 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8IC0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 68Right-handed alpha
Helix 2
AA2
A
72 102Right-handed alpha
Helix 3
AA3
A
106 140Right-handed alpha
Helix 4
AA4
A
152 168Right-handed alpha
Helix 5
AA5
A
168 174Right-handed alpha
Helix 6
AA6
A
194 203Right-handed alpha
Helix 7
AA7
A
203 209Right-handed alpha
Helix 8
AA8
A
211 232Right-handed alpha
Helix 9
AA9
A
237 270Right-handed alpha
Helix 10
AB1
A
276 297Right-handed alpha
Helix 11
AB2
A
299 306Right-handed alpha
Helix 12
AB3
A
309 322Right-handed alpha
Helix 13
AB4
B
6 33Right-handed alpha
Helix 14
AB5
B
45 50Right-handed alpha
Helix 15
AB6
B
207 212Right-handed alpha
Helix 16
AB7
B
241 255Right-handed alpha
Helix 17
AB8
B
270 275Right-handed alpha
Helix 18
AB9
B
282 286Right-handed 310
Helix 19
AC1
B
295 309Right-handed alpha
Helix 20
AC2
B
329 352Right-handed alpha
Helix 21
AC3
C
4 26Right-handed alpha
Helix 22
AC4
C
128 132Right-handed 310
Helix 23
AC5
C
280 282Right-handed 310
Helix 24
AC6
D
8 23Right-handed alpha
Helix 25
AC7
D
29 45Right-handed alpha
Helix 26
AC8
D
46 48Right-handed 310
Helix 27
AC9
E
28 32Right-handed 310
Helix 28
AD1
E
53 56Right-handed 310
Helix 29
AD2
E
87 91Right-handed 310
Helix 30
AD3
E
208 212Right-handed 310
Helix 31
AD4
F
55 69Right-handed alpha
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There are 14 sheets in PDB entry 8IC0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 186first strand
Strand 2
B
199 200anti-parallel
Strand 3
B
36 38parallel
Strand 4
B
220 226parallel
Strand 5
B
266 269parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 51first strand
Strand 2
C
336 340anti-parallel
Strand 3
C
327 331anti-parallel
Strand 4
C
315 317anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 63first strand
Strand 2
C
69 74anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
91 94anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
103 105first strand
Strand 2
C
111 114anti-parallel
Strand 3
C
121 125anti-parallel
Strand 4
C
135 139anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
149 153first strand
Strand 2
C
156 159anti-parallel
Strand 3
C
165 170anti-parallel
Strand 4
C
176 181anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 192first strand
Strand 2
C
198 203anti-parallel
Strand 3
C
208 212anti-parallel
Strand 4
C
220 222anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 234first strand
Strand 2
C
240 245anti-parallel
Strand 3
C
250 254anti-parallel
Strand 4
C
260 262anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 278first strand
Strand 2
C
284 289anti-parallel
Strand 3
C
296 298anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
17 25anti-parallel
Strand 3
E
78 84anti-parallel
Strand 4
E
68 73anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
117 119parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 60first strand
Strand 2
E
46 51anti-parallel
Strand 3
E
34 39anti-parallel
Strand 4
E
93 95anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
135 136first strand
Strand 2
E
231 234parallel
Strand 3
E
214 218anti-parallel
Strand 4
E
163 167anti-parallel
Strand 5
E
174 178anti-parallel
Strand 6
E
182 183anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
143 146first strand
Strand 2
E
200 204anti-parallel
Strand 3
E
191 195anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
24 28first strand
Strand 2
F
38 42anti-parallel
Strand 3
F
48 49anti-parallel
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