Analysis of interatomic Contacts of Structural Units in PDB entry:
8ID0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ID0 entry

There is 1 chain in PDB entry 8ID0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5LEU 776
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8ID0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 27Right-handed alpha
Helix 2
AA2
A
34 45Right-handed alpha
Helix 3
AA3
A
51 67Right-handed alpha
Helix 4
AA4
A
96 102Right-handed alpha
Helix 5
AA5
A
117 128Right-handed alpha
Helix 6
AA6
A
128 133Right-handed alpha
Helix 7
AA7
A
136 145Right-handed alpha
Helix 8
AA8
A
146 155Right-handed alpha
Helix 9
AA9
A
173 181Right-handed alpha
Helix 10
AB1
A
181 196Right-handed alpha
Helix 11
AB2
A
199 229Right-handed alpha
Helix 12
AB3
A
231 249Right-handed alpha
Helix 13
AB4
A
255 275Right-handed alpha
Helix 14
AB5
A
283 297Right-handed alpha
Helix 15
AB6
A
301 317Right-handed alpha
Helix 16
AB7
A
324 331Right-handed alpha
Helix 17
AB8
A
354 363Right-handed alpha
Helix 18
AB9
A
363 368Right-handed alpha
Helix 19
AC1
A
383 396Right-handed alpha
Helix 20
AC2
A
406 416Right-handed alpha
Helix 21
AC3
A
419 425Right-handed alpha
Helix 22
AC4
A
451 462Right-handed alpha
Helix 23
AC5
A
469 503Right-handed alpha
Helix 24
AC6
A
505 511Right-handed alpha
Helix 25
AC7
A
514 519Right-handed alpha
Helix 26
AC8
A
521 525Right-handed 310
Helix 27
AC9
A
538 553Right-handed alpha
Helix 28
AD1
A
560 570Right-handed alpha
Helix 29
AD2
A
573 575Right-handed 310
Helix 30
AD3
A
576 586Right-handed alpha
Helix 31
AD4
A
594 613Right-handed alpha
Helix 32
AD5
A
632 639Right-handed alpha
Helix 33
AD6
A
668 679Right-handed alpha
Helix 34
AD7
A
696 699Right-handed 310
Helix 35
AD8
A
700 718Right-handed alpha
Helix 36
AD9
A
729 739Right-handed alpha
Helix 37
AE1
A
740 744Right-handed 310
Helix 38
AE2
A
758 760Right-handed 310
Helix 39
AE3
A
761 771Right-handed alpha
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There are 6 sheets in PDB entry 8ID0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
88 89parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
447 450anti-parallel
Strand 3
A
529 537parallel
Strand 4
A
440 441parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
447 450anti-parallel
Strand 3
A
529 537parallel
Strand 4
A
622 626parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 343first strand
Strand 2
A
373 378parallel
Strand 3
A
402 405parallel
Strand 4
A
722 727anti-parallel
Strand 5
A
691 694parallel
Strand 6
A
773 774parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 429first strand
Strand 2
A
433 435anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
747 749first strand
Strand 2
A
754 756anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il