Analysis of interatomic Contacts of Structural Units in PDB entry:
8ID3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ID3 entry

There are 5 chains in PDB entry 8ID3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 2	ASN 340
S	VAL 2	GLU 247
Y	THR 6	ARG 62
A	GLY 2	PHE 354
R	ARG 22	LEU 325

There are 25 helices in PDB entry 8ID3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	2	25	Right-handed alpha
Helix 2	AA2	B	29	34	Right-handed alpha
Helix 3	AA3	S	28	32	Right-handed 310
Helix 4	AA4	S	221	225	Right-handed 310
Helix 5	AA5	Y	7	23	Right-handed alpha
Helix 6	AA6	Y	29	44	Right-handed alpha
Helix 7	AA7	A	6	30	Right-handed alpha
Helix 8	AA8	A	45	53	Right-handed alpha
Helix 9	AA9	A	207	216	Right-handed 310
Helix 10	AB1	A	228	230	Right-handed 310
Helix 11	AB2	A	242	255	Right-handed alpha
Helix 12	AB3	A	270	281	Right-handed alpha
Helix 13	AB4	A	282	286	Right-handed 310
Helix 14	AB5	A	295	309	Right-handed alpha
Helix 15	AB6	A	330	351	Right-handed alpha
Helix 16	AB7	R	37	68	Right-handed alpha
Helix 17	AB8	R	76	99	Right-handed alpha
Helix 18	AB9	R	109	142	Right-handed alpha
Helix 19	AC1	R	155	170	Right-handed alpha
Helix 20	AC2	R	171	176	Right-handed alpha
Helix 21	AC3	R	200	217	Right-handed alpha
Helix 22	AC4	R	217	244	Right-handed alpha
Helix 23	AC5	R	251	264	Right-handed alpha
Helix 24	AC6	R	267	294	Right-handed alpha
Helix 25	AC7	R	301	321	Right-handed alpha

There are 12 sheets in PDB entry 8ID3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	166	169	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	231	first strand
Strand 2	B	243	245	anti-parallel
Strand 3	B	250	252	anti-parallel
Strand 4	B	262	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	17	25	anti-parallel
Strand 3	S	78	84	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	116	119	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	33	40	anti-parallel
Strand 5	S	44	51	anti-parallel
Strand 6	S	59	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	141	143	first strand
Strand 2	S	156	162	anti-parallel
Strand 3	S	212	217	anti-parallel
Strand 4	S	205	209	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	147	148	first strand
Strand 2	S	244	246	parallel
Strand 3	S	226	232	anti-parallel
Strand 4	S	175	180	anti-parallel
Strand 5	S	187	191	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	190	first strand
Strand 2	A	195	200	anti-parallel
Strand 3	A	33	39	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	322	323	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ID3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ID3