Analysis of interatomic Contacts of Structural Units in PDB entry:
8ID9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ID9 entry

There are 5 chains in PDB entry 8ID9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 7	ASN 340
Y	SER 8	ARG 62
S	VAL 2	LEU 246
A	GLY 2	PHE 354
R	THR 23	ARG 327

There are 25 helices in PDB entry 8ID9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	8	24	Right-handed alpha
Helix 2	AA2	Y	9	24	Right-handed alpha
Helix 3	AA3	Y	29	44	Right-handed alpha
Helix 4	AA4	Y	55	59	Right-handed 310
Helix 5	AA5	S	28	32	Right-handed 310
Helix 6	AA6	S	87	91	Right-handed 310
Helix 7	AA7	A	6	31	Right-handed alpha
Helix 8	AA8	A	45	53	Right-handed alpha
Helix 9	AA9	A	211	216	Right-handed 310
Helix 10	AB1	A	242	255	Right-handed alpha
Helix 11	AB2	A	271	276	Right-handed alpha
Helix 12	AB3	A	297	309	Right-handed alpha
Helix 13	AB4	A	329	351	Right-handed alpha
Helix 14	AB5	R	35	71	Right-handed alpha
Helix 15	AB6	R	78	90	Right-handed alpha
Helix 16	AB7	R	91	100	Right-handed alpha
Helix 17	AB8	R	107	140	Right-handed alpha
Helix 18	AB9	R	152	170	Right-handed alpha
Helix 19	AC1	R	170	176	Right-handed alpha
Helix 20	AC2	R	200	243	Right-handed alpha
Helix 21	AC3	R	249	251	Right-handed 310
Helix 22	AC4	R	252	276	Right-handed alpha
Helix 23	AC5	R	277	293	Right-handed alpha
Helix 24	AC6	R	301	312	Right-handed alpha
Helix 25	AC7	R	312	322	Right-handed alpha

There are 12 sheets in PDB entry 8ID9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	78	82	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	285	289	anti-parallel
Strand 3	B	294	297	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	17	25	anti-parallel
Strand 3	S	78	84	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	11	first strand
Strand 2	S	115	118	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	33	39	anti-parallel
Strand 5	S	46	51	anti-parallel
Strand 6	S	58	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	141	142	first strand
Strand 2	S	156	162	anti-parallel
Strand 3	S	212	217	anti-parallel
Strand 4	S	204	209	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	195	196	first strand
Strand 2	S	187	191	anti-parallel
Strand 3	S	175	180	anti-parallel
Strand 4	S	227	232	anti-parallel
Strand 5	S	244	245	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	33	39	parallel
Strand 4	A	220	225	parallel
Strand 5	A	263	268	parallel
Strand 6	A	319	322	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ID9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ID9