Analysis of interatomic Contacts of Structural Units in PDB entry:
8IDB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IDB entry

There are 4 chains in PDB entry 8IDB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 213
B
 VAL 8SER 213
C
 GLY 4TYR 294
D
 MET 1VAL 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 8IDB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 51Right-handed 310
Helix 2
AA2
A
75 80Right-handed alpha
Helix 3
AA3
A
97 102Right-handed alpha
Helix 4
AA4
A
105 110Right-handed alpha
Helix 5
AA5
A
119 123Right-handed 310
Helix 6
AA6
A
142 154Right-handed alpha
Helix 7
AA7
A
171 174Right-handed 310
Helix 8
AA8
A
175 184Right-handed alpha
Helix 9
AA9
A
185 189Right-handed 310
Helix 10
AB1
A
201 206Right-handed alpha
Helix 11
AB2
B
40 49Right-handed alpha
Helix 12
AB3
B
75 84Right-handed alpha
Helix 13
AB4
B
97 108Right-handed alpha
Helix 14
AB5
B
112 117Right-handed alpha
Helix 15
AB6
B
120 126Right-handed alpha
Helix 16
AB7
B
136 140Right-handed 310
Helix 17
AB8
B
146 154Right-handed alpha
Helix 18
AB9
B
171 186Right-handed alpha
Helix 19
AC1
B
187 189Right-handed 310
Helix 20
AC2
C
10 17Right-handed alpha
Helix 21
AC3
C
17 22Right-handed alpha
Helix 22
AC4
C
27 49Right-handed alpha
Helix 23
AC5
C
76 84Right-handed alpha
Helix 24
AC6
C
104 109Right-handed alpha
Helix 25
AC7
C
136 141Right-handed alpha
Helix 26
AC8
C
164 198Right-handed alpha
Helix 27
AC9
C
199 209Right-handed alpha
Helix 28
AD1
C
212 245Right-handed alpha
Helix 29
AD2
C
247 257Right-handed alpha
Helix 30
AD3
C
265 292Right-handed alpha
Helix 31
AD4
D
6 17Right-handed alpha
Helix 32
AD5
D
18 46Right-handed alpha
Helix 33
AD6
D
47 50Right-handed 310
Helix 34
AD7
D
63 68Right-handed alpha
Helix 35
AD8
D
75 88Right-handed alpha
Helix 36
AD9
D
110 114Right-handed 310
Helix 37
AE1
D
132 134Right-handed 310
Helix 38
AE2
D
135 144Right-handed alpha
Helix 39
AE3
D
159 169Right-handed alpha
Helix 40
AE4
D
169 199Right-handed alpha
Helix 41
AE5
D
200 210Right-handed alpha
Helix 42
AE6
D
217 247Right-handed alpha
Helix 43
AE7
D
247 257Right-handed alpha
Helix 44
AE8
D
271 295Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8IDB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
25 27anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
160 164parallel
Strand 3
A
191 195parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 86first strand
Strand 2
B
161 163parallel
Strand 3
B
192 193parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 94first strand
Strand 2
C
128 130anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 62first strand
Strand 2
D
149 153anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il