Analysis of interatomic Contacts of Structural Units in PDB entry:
8IDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IDC entry

There are 5 chains in PDB entry 8IDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 227
B
 MET 1VAL 225
E
 ALA 45TYR 385
D
 MET 1VAL 295
C
 MET 1VAL 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8IDC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 50Right-handed alpha
Helix 2
AA2
A
74 82Right-handed alpha
Helix 3
AA3
A
102 106Right-handed 310
Helix 4
AA4
A
112 117Right-handed alpha
Helix 5
AA5
A
119 124Right-handed alpha
Helix 6
AA6
A
144 154Right-handed alpha
Helix 7
AA7
A
171 188Right-handed alpha
Helix 8
AA8
B
38 41Right-handed 310
Helix 9
AA9
B
42 49Right-handed alpha
Helix 10
AB1
B
79 81Right-handed 310
Helix 11
AB2
B
97 108Right-handed alpha
Helix 12
AB3
B
112 117Right-handed alpha
Helix 13
AB4
B
119 128Right-handed alpha
Helix 14
AB5
B
144 153Right-handed alpha
Helix 15
AB6
B
172 174Right-handed 310
Helix 16
AB7
B
175 180Right-handed alpha
Helix 17
AB8
B
180 187Right-handed alpha
Helix 18
AB9
E
48 112Right-handed alpha
Helix 19
AC1
E
120 125Right-handed alpha
Helix 20
AC2
E
127 193Right-handed alpha
Helix 21
AC3
E
193 205Right-handed alpha
Helix 22
AC4
E
210 216Right-handed alpha
Helix 23
AC5
E
273 277Right-handed 310
Helix 24
AC6
E
299 312Right-handed alpha
Helix 25
AC7
E
318 323Right-handed alpha
Helix 26
AC8
D
2 17Right-handed alpha
Helix 27
AC9
D
20 37Right-handed alpha
Helix 28
AD1
D
38 54Right-handed alpha
Helix 29
AD2
D
75 83Right-handed alpha
Helix 30
AD3
D
100 110Right-handed alpha
Helix 31
AD4
D
136 142Right-handed alpha
Helix 32
AD5
D
159 164Right-handed alpha
Helix 33
AD6
D
164 185Right-handed alpha
Helix 34
AD7
D
185 199Right-handed alpha
Helix 35
AD8
D
199 208Right-handed alpha
Helix 36
AD9
D
217 220Right-handed 310
Helix 37
AE1
D
221 247Right-handed alpha
Helix 38
AE2
D
247 252Right-handed alpha
Helix 39
AE3
D
252 258Right-handed alpha
Helix 40
AE4
D
271 293Right-handed alpha
Helix 41
AE5
C
2 17Right-handed alpha
Helix 42
AE6
C
22 49Right-handed alpha
Helix 43
AE7
C
50 52Right-handed 310
Helix 44
AE8
C
63 67Right-handed 310
Helix 45
AE9
C
75 85Right-handed alpha
Helix 46
AF1
C
103 110Right-handed alpha
Helix 47
AF2
C
136 144Right-handed alpha
Helix 48
AF3
C
161 164Right-handed 310
Helix 49
AF4
C
165 189Right-handed alpha
Helix 50
AF5
C
189 199Right-handed alpha
Helix 51
AF6
C
199 210Right-handed alpha
Helix 52
AF7
C
212 216Right-handed 310
Helix 53
AF8
C
217 258Right-handed alpha
Helix 54
AF9
C
264 278Right-handed alpha
Helix 55
AG1
C
281 293Right-handed alpha
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There are 9 sheets in PDB entry 8IDC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
60 62anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
160 164parallel
Strand 3
A
192 195parallel
Strand 4
A
32 35parallel
Strand 5
A
208 212parallel
Strand 6
A
217 219anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
191 193parallel
Strand 3
B
160 163parallel
Strand 4
B
83 86parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
328 329first strand
Strand 2
E
382 383anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
339 342first strand
Strand 2
E
348 351anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
358 359first strand
Strand 2
E
370 371anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 61first strand
Strand 2
D
125 129anti-parallel
Strand 3
D
94 97anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 60first strand
Strand 2
C
152 153anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 94first strand
Strand 2
C
128 130anti-parallel
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