Analysis of interatomic Contacts of Structural Units in PDB entry:
8IDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IDD entry

There are 5 chains in PDB entry 8IDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1VAL 225
D
 MET 1VAL 295
C
 MET 1VAL 295
E
 SER 51THR 209
A
 MET 1VAL 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8IDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
42 51Right-handed alpha
Helix 2
AA2
B
75 82Right-handed alpha
Helix 3
AA3
B
97 108Right-handed alpha
Helix 4
AA4
B
112 118Right-handed alpha
Helix 5
AA5
B
119 128Right-handed alpha
Helix 6
AA6
B
144 151Right-handed alpha
Helix 7
AA7
B
175 189Right-handed alpha
Helix 8
AA8
B
201 206Right-handed alpha
Helix 9
AA9
D
3 17Right-handed alpha
Helix 10
AB1
D
20 54Right-handed alpha
Helix 11
AB2
D
63 68Right-handed alpha
Helix 12
AB3
D
75 81Right-handed alpha
Helix 13
AB4
D
101 109Right-handed alpha
Helix 14
AB5
D
118 122Right-handed 310
Helix 15
AB6
D
139 143Right-handed 310
Helix 16
AB7
D
163 190Right-handed alpha
Helix 17
AB8
D
190 199Right-handed alpha
Helix 18
AB9
D
199 209Right-handed alpha
Helix 19
AC1
D
217 247Right-handed alpha
Helix 20
AC2
D
253 258Right-handed alpha
Helix 21
AC3
D
264 293Right-handed alpha
Helix 22
AC4
C
2 5Right-handed 310
Helix 23
AC5
C
6 17Right-handed alpha
Helix 24
AC6
C
19 48Right-handed alpha
Helix 25
AC7
C
63 68Right-handed alpha
Helix 26
AC8
C
75 83Right-handed alpha
Helix 27
AC9
C
84 88Right-handed 310
Helix 28
AD1
C
98 102Right-handed 310
Helix 29
AD2
C
105 110Right-handed alpha
Helix 30
AD3
C
135 140Right-handed alpha
Helix 31
AD4
C
141 143Right-handed 310
Helix 32
AD5
C
159 199Right-handed alpha
Helix 33
AD6
C
199 210Right-handed alpha
Helix 34
AD7
C
212 246Right-handed alpha
Helix 35
AD8
C
252 258Right-handed alpha
Helix 36
AD9
C
264 270Right-handed 310
Helix 37
AE1
C
271 289Right-handed alpha
Helix 38
AE2
E
52 56Right-handed alpha
Helix 39
AE3
E
57 64Right-handed alpha
Helix 40
AE4
E
65 110Right-handed alpha
Helix 41
AE5
E
118 122Right-handed 310
Helix 42
AE6
E
128 133Right-handed alpha
Helix 43
AE7
E
133 186Right-handed alpha
Helix 44
AE8
E
186 191Right-handed alpha
Helix 45
AE9
E
192 203Right-handed alpha
Helix 46
AF1
A
43 51Right-handed alpha
Helix 47
AF2
A
97 103Right-handed alpha
Helix 48
AF3
A
104 110Right-handed alpha
Helix 49
AF4
A
119 125Right-handed alpha
Helix 50
AF5
A
141 143Right-handed 310
Helix 51
AF6
A
144 154Right-handed alpha
Helix 52
AF7
A
175 180Right-handed alpha
Helix 53
AF8
A
180 189Right-handed alpha
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There are 8 sheets in PDB entry 8IDD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
58 60anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
191 195parallel
Strand 3
B
160 164parallel
Strand 4
B
83 84parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 58first strand
Strand 2
D
125 129anti-parallel
Strand 3
D
93 97anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 62first strand
Strand 2
C
149 153anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 94first strand
Strand 2
C
128 130anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
58 60anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
191 195parallel
Strand 3
A
160 164parallel
Strand 4
A
83 86parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
216 217anti-parallel
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