Analysis of interatomic Contacts of Structural Units in PDB entry:
8IDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IDE entry

There are 2 chains in PDB entry 8IDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 32PRO 1008
B
 THR 755VAL 1005
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 8IDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
93 111Right-handed alpha
Helix 2
AA2
A
128 147Right-handed alpha
Helix 3
AA3
A
154 164Right-handed alpha
Helix 4
AA4
A
205 218Right-handed alpha
Helix 5
AA5
A
225 234Right-handed alpha
Helix 6
AA6
A
237 247Right-handed alpha
Helix 7
AA7
A
263 276Right-handed alpha
Helix 8
AA8
A
279 309Right-handed alpha
Helix 9
AA9
A
319 323Right-handed 310
Helix 10
AB1
A
324 336Right-handed alpha
Helix 11
AB2
A
344 348Right-handed 310
Helix 12
AB3
A
351 366Right-handed alpha
Helix 13
AB4
A
389 397Right-handed alpha
Helix 14
AB5
A
412 422Right-handed alpha
Helix 15
AB6
A
442 454Right-handed alpha
Helix 16
AB7
A
467 476Right-handed alpha
Helix 17
AB8
A
483 494Right-handed alpha
Helix 18
AB9
A
511 516Right-handed alpha
Helix 19
AC1
A
528 538Right-handed alpha
Helix 20
AC2
A
557 565Right-handed alpha
Helix 21
AC3
A
601 607Right-handed alpha
Helix 22
AC4
A
652 666Right-handed alpha
Helix 23
AC5
A
704 714Right-handed alpha
Helix 24
AC6
A
736 743Right-handed alpha
Helix 25
AC7
A
755 762Right-handed alpha
Helix 26
AC8
A
763 773Right-handed alpha
Helix 27
AC9
A
783 795Right-handed alpha
Helix 28
AD1
A
809 813Right-handed 310
Helix 29
AD2
A
819 823Right-handed 310
Helix 30
AD3
A
826 839Right-handed alpha
Helix 31
AD4
A
855 865Right-handed alpha
Helix 32
AD5
A
874 888Right-handed alpha
Helix 33
AD6
A
914 916Right-handed 310
Helix 34
AD7
A
920 933Right-handed alpha
Helix 35
AD8
A
962 981Right-handed alpha
Helix 36
AD9
A
985 995Right-handed alpha
Helix 37
AE1
B
756 762Right-handed alpha
Helix 38
AE2
B
763 772Right-handed alpha
Helix 39
AE3
B
784 795Right-handed alpha
Helix 40
AE4
B
808 815Right-handed alpha
Helix 41
AE5
B
819 823Right-handed 310
Helix 42
AE6
B
826 839Right-handed alpha
Helix 43
AE7
B
856 865Right-handed alpha
Helix 44
AE8
B
874 888Right-handed alpha
Helix 45
AE9
B
914 916Right-handed 310
Helix 46
AF1
B
919 933Right-handed alpha
Helix 47
AF2
B
962 982Right-handed alpha
Helix 48
AF3
B
986 995Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 8IDE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
53 56anti-parallel
Strand 3
A
73 74anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
152 153parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 341first strand
Strand 2
A
315 316parallel
Strand 3
A
174 176parallel
Strand 4
A
185 189anti-parallel
Strand 5
A
195 200anti-parallel
Strand 6
A
387 388parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 379first strand
Strand 2
A
686 689anti-parallel
Strand 3
A
670 674parallel
Strand 4
A
721 726parallel
Strand 5
A
645 650parallel
Strand 6
A
748 750parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 464first strand
Strand 2
A
542 543anti-parallel
Strand 3
A
435 439anti-parallel
Strand 4
A
426 428anti-parallel
Strand 5
A
572 573parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 500first strand
Strand 2
A
586 589parallel
Strand 3
A
594 595anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
774 775first strand
Strand 2
A
798 799parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
911 912first strand
Strand 2
A
939 940anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1004 1005first strand
Strand 2
A
998 999anti-parallel
Strand 3
B
947 948anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
843 844first strand
Strand 2
B
798 799parallel
Strand 3
B
774 777parallel
Strand 4
B
867 870parallel
Strand 5
B
892 895parallel
Strand 6
B
939 942parallel
Strand 7
B
909 912anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il