Analysis of interatomic Contacts of Structural Units in PDB entry:
8IDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IDF entry

There are 2 chains in PDB entry 8IDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7SER 599
B
 G 1 U 53
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8IDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 36Right-handed alpha
Helix 2
AA2
A
37 56Right-handed alpha
Helix 3
AA3
A
68 77Right-handed alpha
Helix 4
AA4
A
78 80Right-handed 310
Helix 5
AA5
A
101 103Right-handed 310
Helix 6
AA6
A
104 110Right-handed alpha
Helix 7
AA7
A
147 152Right-handed alpha
Helix 8
AA8
A
158 171Right-handed alpha
Helix 9
AA9
A
173 195Right-handed alpha
Helix 10
AB1
A
338 351Right-handed alpha
Helix 11
AB2
A
386 401Right-handed alpha
Helix 12
AB3
A
405 419Right-handed alpha
Helix 13
AB4
A
430 445Right-handed alpha
Helix 14
AB5
A
452 459Right-handed alpha
Helix 15
AB6
A
490 505Right-handed alpha
Helix 16
AB7
A
556 576Right-handed alpha
Helix 17
AB8
A
576 581Right-handed alpha
Helix 18
AB9
A
591 596Right-handed alpha
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There are 5 sheets in PDB entry 8IDF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
15 18anti-parallel
Strand 3
A
23 25anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 87first strand
Strand 2
A
95 99anti-parallel
Strand 3
A
57 61anti-parallel
Strand 4
A
122 125anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
119 120anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 204first strand
Strand 2
A
217 222anti-parallel
Strand 3
A
378 383parallel
Strand 4
A
368 373anti-parallel
Strand 5
A
355 361anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 513first strand
Strand 2
A
518 519anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il