Analysis of interatomic Contacts of Structural Units in PDB entry:
8IDP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8IDP entry

There are 3 chains in PDB entry 8IDP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 17	GLU 462
C	TRP 17	GLU 462
B	TRP 17	ASN 393

There are 40 helices in PDB entry 8IDP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	54	Right-handed alpha
Helix 2	AA2	A	60	73	Right-handed alpha
Helix 3	AA3	A	116	128	Right-handed alpha
Helix 4	AA4	A	141	145	Right-handed 310
Helix 5	AA5	A	168	186	Right-handed alpha
Helix 6	AA6	A	212	231	Right-handed alpha
Helix 7	AA7	A	243	257	Right-handed alpha
Helix 8	AA8	A	310	325	Right-handed alpha
Helix 9	AA9	A	339	341	Right-handed 310
Helix 10	AB1	A	356	366	Right-handed alpha
Helix 11	AB2	C	48	54	Right-handed alpha
Helix 12	AB3	C	60	73	Right-handed alpha
Helix 13	AB4	C	116	128	Right-handed alpha
Helix 14	AB5	C	141	145	Right-handed 310
Helix 15	AB6	C	168	186	Right-handed alpha
Helix 16	AB7	C	212	231	Right-handed alpha
Helix 17	AB8	C	243	257	Right-handed alpha
Helix 18	AB9	C	310	325	Right-handed alpha
Helix 19	AC1	C	339	341	Right-handed 310
Helix 20	AC2	C	356	366	Right-handed alpha
Helix 21	AC3	B	48	54	Right-handed alpha
Helix 22	AC4	B	60	73	Right-handed alpha
Helix 23	AC5	B	116	128	Right-handed alpha
Helix 24	AC6	B	141	145	Right-handed 310
Helix 25	AC7	B	168	186	Right-handed alpha
Helix 26	AC8	B	212	231	Right-handed alpha
Helix 27	AC9	B	243	257	Right-handed alpha
Helix 28	AD1	B	310	325	Right-handed alpha
Helix 29	AD2	B	339	341	Right-handed 310
Helix 30	AD3	B	356	366	Right-handed alpha
Helix 31	AD4	D	48	54	Right-handed alpha
Helix 32	AD5	D	60	73	Right-handed alpha
Helix 33	AD6	D	116	128	Right-handed alpha
Helix 34	AD7	D	141	145	Right-handed 310
Helix 35	AD8	D	168	186	Right-handed alpha
Helix 36	AD9	D	212	231	Right-handed alpha
Helix 37	AE1	D	243	257	Right-handed alpha
Helix 38	AE2	D	310	325	Right-handed alpha
Helix 39	AE3	D	339	341	Right-handed 310
Helix 40	AE4	D	356	366	Right-handed alpha

There are 12 sheets in PDB entry 8IDP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	386	first strand
Strand 2	A	396	402	anti-parallel
Strand 3	A	455	462	anti-parallel
Strand 4	A	422	429	anti-parallel
Strand 5	A	432	441	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	386	first strand
Strand 2	A	396	402	anti-parallel
Strand 3	A	388	390	anti-parallel
Strand 4	A	373	379	anti-parallel
Strand 5	A	23	37	anti-parallel
Strand 6	A	408	415	parallel
Strand 7	A	446	451	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	354	first strand
Strand 2	A	343	348	anti-parallel
Strand 3	A	329	337	parallel
Strand 4	A	286	291	parallel
Strand 5	A	265	269	parallel
Strand 6	A	235	241	parallel
Strand 7	A	192	194	parallel
Strand 8	A	132	137	parallel
Strand 9	A	81	86	parallel
Strand 10	A	40	44	parallel
Strand 11	A	329	337	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	384	386	first strand
Strand 2	C	396	402	anti-parallel
Strand 3	C	455	462	anti-parallel
Strand 4	C	422	429	anti-parallel
Strand 5	C	432	441	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	384	386	first strand
Strand 2	C	396	402	anti-parallel
Strand 3	C	388	390	anti-parallel
Strand 4	C	373	379	anti-parallel
Strand 5	C	23	37	anti-parallel
Strand 6	C	408	415	parallel
Strand 7	C	446	451	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	354	first strand
Strand 2	C	343	348	anti-parallel
Strand 3	C	329	337	parallel
Strand 4	C	286	291	parallel
Strand 5	C	265	269	parallel
Strand 6	C	235	241	parallel
Strand 7	C	192	194	parallel
Strand 8	C	132	137	parallel
Strand 9	C	81	86	parallel
Strand 10	C	40	44	parallel
Strand 11	C	329	337	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	386	first strand
Strand 2	B	396	402	anti-parallel
Strand 3	B	455	462	anti-parallel
Strand 4	B	422	429	anti-parallel
Strand 5	B	432	441	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	386	first strand
Strand 2	B	396	402	anti-parallel
Strand 3	B	388	390	anti-parallel
Strand 4	B	373	379	anti-parallel
Strand 5	B	23	37	anti-parallel
Strand 6	B	408	415	parallel
Strand 7	B	446	451	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	354	first strand
Strand 2	B	343	348	anti-parallel
Strand 3	B	329	337	parallel
Strand 4	B	286	291	parallel
Strand 5	B	265	269	parallel
Strand 6	B	235	241	parallel
Strand 7	B	192	194	parallel
Strand 8	B	132	137	parallel
Strand 9	B	81	86	parallel
Strand 10	B	40	44	parallel
Strand 11	B	329	337	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	384	386	first strand
Strand 2	D	396	402	anti-parallel
Strand 3	D	455	462	anti-parallel
Strand 4	D	422	429	anti-parallel
Strand 5	D	432	441	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	384	386	first strand
Strand 2	D	396	402	anti-parallel
Strand 3	D	388	390	anti-parallel
Strand 4	D	373	379	anti-parallel
Strand 5	D	23	37	anti-parallel
Strand 6	D	408	415	parallel
Strand 7	D	446	451	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	351	354	first strand
Strand 2	D	343	348	anti-parallel
Strand 3	D	329	337	parallel
Strand 4	D	286	291	parallel
Strand 5	D	265	269	parallel
Strand 6	D	235	241	parallel
Strand 7	D	192	194	parallel
Strand 8	D	132	137	parallel
Strand 9	D	81	86	parallel
Strand 10	D	40	44	parallel
Strand 11	D	329	337	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8IDP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8IDP