Analysis of interatomic Contacts of Structural Units in PDB entry:
8IDS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IDS entry

There is 1 chain in PDB entry 8IDS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2LEU 556
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8IDS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed alpha
Helix 2
AA2
A
15 19Right-handed 310
Helix 3
AA3
A
29 36Right-handed alpha
Helix 4
AA4
A
36 44Right-handed alpha
Helix 5
AA5
A
77 91Right-handed alpha
Helix 6
AA6
A
108 115Right-handed alpha
Helix 7
AA7
A
122 126Right-handed 310
Helix 8
AA8
A
174 190Right-handed alpha
Helix 9
AA9
A
200 204Right-handed 310
Helix 10
AB1
A
224 229Right-handed alpha
Helix 11
AB2
A
233 245Right-handed alpha
Helix 12
AB3
A
246 249Right-handed 310
Helix 13
AB4
A
261 264Right-handed 310
Helix 14
AB5
A
265 270Right-handed alpha
Helix 15
AB6
A
282 286Right-handed 310
Helix 16
AB7
A
297 315Right-handed alpha
Helix 17
AB8
A
330 336Right-handed alpha
Helix 18
AB9
A
337 339Right-handed 310
Helix 19
AC1
A
340 354Right-handed alpha
Helix 20
AC2
A
364 368Right-handed 310
Helix 21
AC3
A
376 380Right-handed 310
Helix 22
AC4
A
382 395Right-handed alpha
Helix 23
AC5
A
398 410Right-handed alpha
Helix 24
AC6
A
411 415Right-handed 310
Helix 25
AC7
A
423 428Right-handed 310
Helix 26
AC8
A
438 443Right-handed 310
Helix 27
AC9
A
445 451Right-handed alpha
Helix 28
AD1
A
455 470Right-handed alpha
Helix 29
AD2
A
471 476Right-handed alpha
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There are 6 sheets in PDB entry 8IDS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 280first strand
Strand 2
A
252 256parallel
Strand 3
A
195 198parallel
Strand 4
A
94 99parallel
Strand 5
A
47 50parallel
Strand 6
A
11 14parallel
Strand 7
A
358 362parallel
Strand 8
A
320 321parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
67 71anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
157 160anti-parallel
Strand 3
A
149 152anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
222 223parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
477 481first strand
Strand 2
A
488 495anti-parallel
Strand 3
A
498 505anti-parallel
Strand 4
A
549 555anti-parallel
Strand 5
A
523 529anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 514first strand
Strand 2
A
541 544anti-parallel
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