Analysis of interatomic Contacts of Structural Units in PDB entry:
8IDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IDV entry

There are 4 chains in PDB entry 8IDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASN 4LYS 190
C
 LEU 6LYS 190
D
 ALA 3LYS 190
A
 GLU 7LYS 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8IDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
9 25Right-handed alpha
Helix 2
AA2
B
27 31Right-handed 310
Helix 3
AA3
B
35 47Right-handed alpha
Helix 4
AA4
B
73 85Right-handed alpha
Helix 5
AA5
B
89 104Right-handed alpha
Helix 6
AA6
B
111 126Right-handed alpha
Helix 7
AA7
B
132 135Right-handed 310
Helix 8
AA8
B
136 150Right-handed alpha
Helix 9
AA9
B
151 161Right-handed alpha
Helix 10
AB1
B
168 184Right-handed alpha
Helix 11
AB2
C
7 25Right-handed alpha
Helix 12
AB3
C
26 30Right-handed 310
Helix 13
AB4
C
35 47Right-handed alpha
Helix 14
AB5
C
74 85Right-handed alpha
Helix 15
AB6
C
89 104Right-handed alpha
Helix 16
AB7
C
109 126Right-handed alpha
Helix 17
AB8
C
136 150Right-handed alpha
Helix 18
AB9
C
151 161Right-handed alpha
Helix 19
AC1
C
168 183Right-handed alpha
Helix 20
AC2
D
9 24Right-handed alpha
Helix 21
AC3
D
27 31Right-handed 310
Helix 22
AC4
D
35 47Right-handed alpha
Helix 23
AC5
D
75 84Right-handed alpha
Helix 24
AC6
D
89 104Right-handed alpha
Helix 25
AC7
D
113 126Right-handed alpha
Helix 26
AC8
D
132 135Right-handed 310
Helix 27
AC9
D
136 148Right-handed alpha
Helix 28
AD1
D
151 160Right-handed alpha
Helix 29
AD2
D
168 184Right-handed alpha
Helix 30
AD3
A
10 25Right-handed alpha
Helix 31
AD4
A
27 31Right-handed 310
Helix 32
AD5
A
35 47Right-handed alpha
Helix 33
AD6
A
74 85Right-handed alpha
Helix 34
AD7
A
89 104Right-handed alpha
Helix 35
AD8
A
111 127Right-handed alpha
Helix 36
AD9
A
136 146Right-handed alpha
Helix 37
AE1
A
147 150Right-handed 310
Helix 38
AE2
A
151 160Right-handed alpha
Helix 39
AE3
A
168 184Right-handed alpha
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There are 4 sheets in PDB entry 8IDV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 130first strand
Strand 2
B
162 163anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 130first strand
Strand 2
C
162 163anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
129 130first strand
Strand 2
D
162 163anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
162 163anti-parallel
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