Analysis of interatomic Contacts of Structural Units in PDB entry:
8IDX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IDX entry

There are 2 chains in PDB entry 8IDX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 201ALA 394
B
 ALA 201ALA 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8IDX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
249 253Right-handed 310
Helix 2
AA2
A
286 290Right-handed 310
Helix 3
AA3
A
294 303Right-handed alpha
Helix 4
AA4
A
306 311Right-handed alpha
Helix 5
AA5
A
351 355Right-handed 310
Helix 6
AA6
B
249 253Right-handed 310
Helix 7
AA7
B
286 290Right-handed 310
Helix 8
AA8
B
294 303Right-handed alpha
Helix 9
AA9
B
306 311Right-handed alpha
Helix 10
AB1
B
351 355Right-handed 310
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There are 6 sheets in PDB entry 8IDX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 204first strand
Strand 2
A
267 270anti-parallel
Strand 3
A
273 276anti-parallel
Strand 4
A
242 247parallel
Strand 5
A
228 237anti-parallel
Strand 6
A
219 222anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 204first strand
Strand 2
A
267 270anti-parallel
Strand 3
A
273 276anti-parallel
Strand 4
A
242 247parallel
Strand 5
A
228 237anti-parallel
Strand 6
A
208 215anti-parallel
Strand 7
A
261 265anti-parallel
Strand 8
A
281 284anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 392first strand
Strand 2
A
364 375anti-parallel
Strand 3
A
378 382anti-parallel
Strand 4
A
344 350parallel
Strand 5
A
335 341anti-parallel
Strand 6
A
318 330anti-parallel
Strand 7
A
364 375anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 204first strand
Strand 2
B
267 270anti-parallel
Strand 3
B
273 276anti-parallel
Strand 4
B
242 247parallel
Strand 5
B
228 237anti-parallel
Strand 6
B
219 222anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 204first strand
Strand 2
B
267 270anti-parallel
Strand 3
B
273 276anti-parallel
Strand 4
B
242 247parallel
Strand 5
B
228 237anti-parallel
Strand 6
B
208 215anti-parallel
Strand 7
B
261 265anti-parallel
Strand 8
B
281 284anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 392first strand
Strand 2
B
364 375anti-parallel
Strand 3
B
378 382anti-parallel
Strand 4
B
344 350parallel
Strand 5
B
335 341anti-parallel
Strand 6
B
318 330anti-parallel
Strand 7
B
364 375anti-parallel
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