Analysis of interatomic Contacts of Structural Units in PDB entry:
8IDZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8IDZ entry

There are 2 chains in PDB entry 8IDZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 2	LYS 761
B	GLN 2	VAL 637

There are 47 helices in PDB entry 8IDZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	17	Right-handed alpha
Helix 2	AA2	A	19	28	Right-handed alpha
Helix 3	AA3	A	59	63	Right-handed 310
Helix 4	AA4	A	96	104	Right-handed alpha
Helix 5	AA5	A	105	123	Right-handed alpha
Helix 6	AA6	A	151	168	Right-handed alpha
Helix 7	AA7	A	186	189	Right-handed 310
Helix 8	AA8	A	195	202	Right-handed alpha
Helix 9	AA9	A	204	214	Right-handed alpha
Helix 10	AB1	A	234	239	Right-handed alpha
Helix 11	AB2	A	261	269	Right-handed alpha
Helix 12	AB3	A	277	291	Right-handed alpha
Helix 13	AB4	A	294	312	Right-handed alpha
Helix 14	AB5	A	312	317	Right-handed alpha
Helix 15	AB6	A	325	340	Right-handed alpha
Helix 16	AB7	A	364	368	Right-handed 310
Helix 17	AB8	A	387	395	Right-handed alpha
Helix 18	AB9	A	400	417	Right-handed alpha
Helix 19	AC1	A	443	448	Right-handed alpha
Helix 20	AC2	A	477	493	Right-handed alpha
Helix 21	AC3	A	529	540	Right-handed alpha
Helix 22	AC4	A	555	565	Right-handed 310
Helix 23	AC5	A	607	614	Right-handed alpha
Helix 24	AC6	A	704	708	Right-handed 310
Helix 25	AC7	B	10	16	Right-handed alpha
Helix 26	AC8	B	19	28	Right-handed alpha
Helix 27	AC9	B	96	104	Right-handed alpha
Helix 28	AD1	B	105	123	Right-handed alpha
Helix 29	AD2	B	151	169	Right-handed alpha
Helix 30	AD3	B	195	202	Right-handed alpha
Helix 31	AD4	B	204	214	Right-handed alpha
Helix 32	AD5	B	234	239	Right-handed alpha
Helix 33	AD6	B	261	268	Right-handed alpha
Helix 34	AD7	B	277	291	Right-handed alpha
Helix 35	AD8	B	294	311	Right-handed alpha
Helix 36	AD9	B	325	341	Right-handed alpha
Helix 37	AE1	B	348	350	Right-handed 310
Helix 38	AE2	B	364	369	Right-handed alpha
Helix 39	AE3	B	387	395	Right-handed alpha
Helix 40	AE4	B	400	417	Right-handed alpha
Helix 41	AE5	B	443	451	Right-handed alpha
Helix 42	AE6	B	477	492	Right-handed alpha
Helix 43	AE7	B	493	495	Right-handed 310
Helix 44	AE8	B	530	540	Right-handed alpha
Helix 45	AE9	B	559	563	Right-handed 310
Helix 46	AF1	B	606	613	Right-handed alpha
Helix 47	AF2	B	704	708	Right-handed 310

There are 18 sheets in PDB entry 8IDZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	71	first strand
Strand 2	A	127	129	parallel
Strand 3	A	172	173	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	230	first strand
Strand 2	A	225	226	anti-parallel
Strand 3	A	191	193	parallel
Strand 4	A	596	598	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	251	254	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	346	first strand
Strand 2	A	519	522	anti-parallel
Strand 3	A	498	503	parallel
Strand 4	A	453	459	parallel
Strand 5	A	359	363	parallel
Strand 6	A	398	399	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	552	553	first strand
Strand 2	A	617	619	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	630	631	first strand
Strand 2	A	645	653	anti-parallel
Strand 3	A	636	639	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	630	631	first strand
Strand 2	A	645	653	anti-parallel
Strand 3	A	694	702	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	679	686	first strand
Strand 2	A	662	668	anti-parallel
Strand 3	A	726	729	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	709	711	first strand
Strand 2	A	716	718	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	722	724	first strand
Strand 2	A	742	744	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	56	first strand
Strand 2	B	67	70	anti-parallel
Strand 3	B	127	128	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	226	first strand
Strand 2	B	191	193	parallel
Strand 3	B	597	598	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	220	first strand
Strand 2	B	251	253	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	519	522	anti-parallel
Strand 3	B	498	503	parallel
Strand 4	B	453	459	parallel
Strand 5	B	359	363	parallel
Strand 6	B	398	399	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	552	553	first strand
Strand 2	B	617	619	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	630	632	first strand
Strand 2	B	645	653	anti-parallel
Strand 3	B	638	639	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	630	632	first strand
Strand 2	B	645	653	anti-parallel
Strand 3	B	694	702	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	679	686	first strand
Strand 2	B	662	668	anti-parallel
Strand 3	B	722	729	anti-parallel
Strand 4	B	738	744	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8IDZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8IDZ