Analysis of interatomic Contacts of Structural Units in PDB entry:
8IF2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IF2 entry

There are 2 chains in PDB entry 8IF2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19TYR 613
B
 PHE 329PRO 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8IF2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 53Right-handed alpha
Helix 2
AA2
A
55 80Right-handed alpha
Helix 3
AA3
A
81 83Right-handed 310
Helix 4
AA4
A
84 88Right-handed 310
Helix 5
AA5
A
90 101Right-handed alpha
Helix 6
AA6
A
109 130Right-handed alpha
Helix 7
AA7
A
146 155Right-handed alpha
Helix 8
AA8
A
157 194Right-handed alpha
Helix 9
AA9
A
198 205Right-handed alpha
Helix 10
AB1
A
206 208Right-handed 310
Helix 11
AB2
A
218 252Right-handed alpha
Helix 12
AB3
A
275 277Right-handed 310
Helix 13
AB4
A
278 283Right-handed alpha
Helix 14
AB5
A
294 300Right-handed alpha
Helix 15
AB6
A
303 317Right-handed alpha
Helix 16
AB7
A
324 331Right-handed alpha
Helix 17
AB8
A
365 385Right-handed alpha
Helix 18
AB9
A
386 388Right-handed 310
Helix 19
AC1
A
389 393Right-handed 310
Helix 20
AC2
A
397 402Right-handed alpha
Helix 21
AC3
A
403 414Right-handed alpha
Helix 22
AC4
A
414 421Right-handed alpha
Helix 23
AC5
A
431 447Right-handed alpha
Helix 24
AC6
A
448 465Right-handed alpha
Helix 25
AC7
A
469 472Right-handed 310
Helix 26
AC8
A
473 484Right-handed alpha
Helix 27
AC9
A
499 502Right-handed 310
Helix 28
AD1
A
503 508Right-handed alpha
Helix 29
AD2
A
513 533Right-handed alpha
Helix 30
AD3
A
538 542Right-handed 310
Helix 31
AD4
A
547 559Right-handed alpha
Helix 32
AD5
A
565 572Right-handed alpha
Helix 33
AD6
A
581 588Right-handed alpha
Helix 34
AD7
A
588 599Right-handed alpha
Helix 35
AD8
B
337 343Right-handed alpha
Helix 36
AD9
B
349 353Right-handed 310
Helix 37
AE1
B
364 368Right-handed 310
Helix 38
AE2
B
386 389Right-handed 310
Helix 39
AE3
B
405 410Right-handed 310
Helix 40
AE4
B
416 422Right-handed alpha
Helix 41
AE5
B
438 443Right-handed alpha
Helix 42
AE6
B
502 505Right-handed 310
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There are 7 sheets in PDB entry 8IF2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
141 143anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
355 359anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 335first strand
Strand 2
B
361 362parallel
Strand 3
B
524 525parallel
Strand 4
B
391 392anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 358first strand
Strand 2
B
394 403anti-parallel
Strand 3
B
507 516anti-parallel
Strand 4
B
431 437anti-parallel
Strand 5
B
376 380anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 454first strand
Strand 2
B
492 494anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
473 474first strand
Strand 2
B
488 489anti-parallel
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