Analysis of interatomic Contacts of Structural Units in PDB entry:
8IF3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IF3 entry

There is 1 chain in PDB entry 8IF3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 27CYS 1059
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8IF3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 53Right-handed alpha
Helix 2
AA2
A
53 65Right-handed alpha
Helix 3
AA3
A
74 110Right-handed alpha
Helix 4
AA4
A
176 187Right-handed alpha
Helix 5
AA5
A
189 200Right-handed alpha
Helix 6
AA6
A
241 249Right-handed alpha
Helix 7
AA7
A
261 265Right-handed 310
Helix 8
AA8
A
266 283Right-handed alpha
Helix 9
AA9
A
311 324Right-handed alpha
Helix 10
AB1
A
332 345Right-handed alpha
Helix 11
AB2
A
396 406Right-handed alpha
Helix 12
AB3
A
425 431Right-handed alpha
Helix 13
AB4
A
431 438Right-handed alpha
Helix 14
AB5
A
494 500Right-handed alpha
Helix 15
AB6
A
541 546Right-handed alpha
Helix 16
AB7
A
549 559Right-handed alpha
Helix 17
AB8
A
637 639Right-handed 310
Helix 18
AB9
A
640 645Right-handed alpha
Helix 19
AC1
A
664 677Right-handed alpha
Helix 20
AC2
A
686 707Right-handed alpha
Helix 21
AC3
A
733 739Right-handed alpha
Helix 22
AC4
A
745 748Right-handed 310
Helix 23
AC5
A
749 758Right-handed alpha
Helix 24
AC6
A
805 814Right-handed alpha
Helix 25
AC7
A
862 866Right-handed 310
Helix 26
AC8
A
867 877Right-handed alpha
Helix 27
AC9
A
1030 1035Right-handed alpha
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There are 11 sheets in PDB entry 8IF3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 72first strand
Strand 2
A
610 614anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
165 167parallel
Strand 3
A
215 217anti-parallel
Strand 4
A
205 210anti-parallel
Strand 5
A
486 493anti-parallel
Strand 6
A
458 461anti-parallel
Strand 7
A
450 451anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
165 167parallel
Strand 3
A
215 217anti-parallel
Strand 4
A
205 210anti-parallel
Strand 5
A
486 493anti-parallel
Strand 6
A
464 466anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
155 159anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 300first strand
Strand 2
A
291 294anti-parallel
Strand 3
A
254 259parallel
Strand 4
A
357 362parallel
Strand 5
A
384 388parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 523first strand
Strand 2
A
511 515anti-parallel
Strand 3
A
599 605anti-parallel
Strand 4
A
581 592anti-parallel
Strand 5
A
565 574anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
646 649first strand
Strand 2
A
728 731anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
717 724first strand
Strand 2
A
798 804anti-parallel
Strand 3
A
780 785anti-parallel
Strand 4
A
762 764anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
788 789first strand
Strand 2
A
794 795anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
849 850first strand
Strand 2
A
836 841anti-parallel
Strand 3
A
1002 1007anti-parallel
Strand 4
A
988 995anti-parallel
Strand 5
A
978 983anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
880 887first strand
Strand 2
A
964 971anti-parallel
Strand 3
A
1024 1025anti-parallel
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