Analysis of interatomic Contacts of Structural Units in PDB entry:
8IFJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8IFJ entry

There are 5 chains in PDB entry 8IFJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	ASP 273
B	VAL 2	ASP 273
C	VAL 2	ASP 273
D	MET 1	ASP 273
E	MET 1	ASN 165

There are101 helices in PDB entry 8IFJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	15	Right-handed alpha
Helix 2	AA2	A	28	57	Right-handed alpha
Helix 3	AA3	A	60	76	Right-handed alpha
Helix 4	AA4	A	89	95	Right-handed alpha
Helix 5	AA5	A	103	107	Right-handed 310
Helix 6	AA6	A	120	131	Right-handed alpha
Helix 7	AA7	A	132	135	Right-handed 310
Helix 8	AA8	A	174	191	Right-handed alpha
Helix 9	AA9	A	228	232	Right-handed 310
Helix 10	AB1	A	244	253	Right-handed alpha
Helix 11	AB2	A	256	260	Right-handed 310
Helix 12	AB3	B	8	17	Right-handed alpha
Helix 13	AB4	B	28	57	Right-handed alpha
Helix 14	AB5	B	60	76	Right-handed alpha
Helix 15	AB6	B	89	95	Right-handed alpha
Helix 16	AB7	B	101	107	Right-handed 310
Helix 17	AB8	B	120	133	Right-handed alpha
Helix 18	AB9	B	174	191	Right-handed alpha
Helix 19	AC1	B	228	232	Right-handed 310
Helix 20	AC2	B	244	252	Right-handed alpha
Helix 21	AC3	B	256	260	Right-handed 310
Helix 22	AC4	C	6	16	Right-handed alpha
Helix 23	AC5	C	28	57	Right-handed alpha
Helix 24	AC6	C	60	76	Right-handed alpha
Helix 25	AC7	C	89	94	Right-handed alpha
Helix 26	AC8	C	101	106	Right-handed 310
Helix 27	AC9	C	120	132	Right-handed alpha
Helix 28	AD1	C	133	135	Right-handed 310
Helix 29	AD2	C	174	191	Right-handed alpha
Helix 30	AD3	C	228	232	Right-handed 310
Helix 31	AD4	C	244	253	Right-handed alpha
Helix 32	AD5	C	256	260	Right-handed 310
Helix 33	AD6	D	6	17	Right-handed alpha
Helix 34	AD7	D	28	57	Right-handed alpha
Helix 35	AD8	D	60	75	Right-handed alpha
Helix 36	AD9	D	89	94	Right-handed alpha
Helix 37	AE1	D	103	107	Right-handed 310
Helix 38	AE2	D	120	131	Right-handed alpha
Helix 39	AE3	D	132	135	Right-handed 310
Helix 40	AE4	D	174	190	Right-handed alpha
Helix 41	AE5	D	244	252	Right-handed alpha
Helix 42	AE6	E	6	17	Right-handed alpha
Helix 43	AE7	E	28	57	Right-handed alpha
Helix 44	AE8	E	60	75	Right-handed alpha
Helix 45	AE9	E	89	94	Right-handed alpha
Helix 46	AF1	E	102	107	Right-handed 310
Helix 47	AF2	E	120	131	Right-handed alpha
Helix 48	AF3	E	132	135	Right-handed 310
Helix 49	AF4	E	174	191	Right-handed alpha
Helix 50	AF5	E	228	232	Right-handed 310
Helix 51	AF6	E	244	252	Right-handed alpha
Helix 52	AF7	E	256	260	Right-handed 310
Helix 53	AF8	F	6	17	Right-handed alpha
Helix 54	AF9	F	28	57	Right-handed alpha
Helix 55	AG1	F	60	76	Right-handed alpha
Helix 56	AG2	F	89	95	Right-handed alpha
Helix 57	AG3	F	103	107	Right-handed 310
Helix 58	AG4	F	120	133	Right-handed alpha
Helix 59	AG5	F	174	191	Right-handed alpha
Helix 60	AG6	F	228	232	Right-handed 310
Helix 61	AG7	F	244	252	Right-handed alpha
Helix 62	AG8	F	256	260	Right-handed 310
Helix 63	AG9	G	10	15	Right-handed alpha
Helix 64	AH1	G	28	57	Right-handed alpha
Helix 65	AH2	G	60	75	Right-handed alpha
Helix 66	AH3	G	89	94	Right-handed alpha
Helix 67	AH4	G	103	107	Right-handed 310
Helix 68	AH5	G	120	133	Right-handed alpha
Helix 69	AH6	G	174	191	Right-handed alpha
Helix 70	AH7	G	228	232	Right-handed 310
Helix 71	AH8	G	244	253	Right-handed alpha
Helix 72	AH9	G	256	260	Right-handed 310
Helix 73	AI1	H	6	17	Right-handed alpha
Helix 74	AI2	H	30	57	Right-handed alpha
Helix 75	AI3	H	60	76	Right-handed alpha
Helix 76	AI4	H	89	94	Right-handed alpha
Helix 77	AI5	H	103	107	Right-handed 310
Helix 78	AI6	H	120	133	Right-handed alpha
Helix 79	AI7	H	174	191	Right-handed alpha
Helix 80	AI8	H	228	232	Right-handed 310
Helix 81	AI9	H	244	253	Right-handed alpha
Helix 82	AJ1	H	256	260	Right-handed 310
Helix 83	AJ2	I	6	17	Right-handed alpha
Helix 84	AJ3	I	28	57	Right-handed alpha
Helix 85	AJ4	I	60	75	Right-handed alpha
Helix 86	AJ5	I	89	94	Right-handed alpha
Helix 87	AJ6	I	101	107	Right-handed 310
Helix 88	AJ7	I	120	133	Right-handed alpha
Helix 89	AJ8	I	174	191	Right-handed alpha
Helix 90	AJ9	I	228	232	Right-handed 310
Helix 91	AK1	I	244	252	Right-handed alpha
Helix 92	AK2	I	256	260	Right-handed 310
Helix 93	AK3	J	6	16	Right-handed alpha
Helix 94	AK4	J	30	57	Right-handed alpha
Helix 95	AK5	J	60	76	Right-handed alpha
Helix 96	AK6	J	89	94	Right-handed alpha
Helix 97	AK7	J	101	105	Right-handed 310
Helix 98	AK8	J	120	132	Right-handed alpha
Helix 99	AK9	J	133	135	Right-handed 310
Helix 100	AL1	J	174	191	Right-handed alpha
Helix 101	AL2	J	244	253	Right-handed alpha

There are 34 sheets in PDB entry 8IFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	25	26	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	80	first strand
Strand 2	A	139	148	parallel
Strand 3	A	160	169	anti-parallel
Strand 4	A	237	243	anti-parallel
Strand 5	A	215	223	anti-parallel
Strand 6	A	206	212	anti-parallel
Strand 7	A	195	199	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	88	first strand
Strand 2	A	114	116	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	270	271	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	80	first strand
Strand 2	B	140	148	parallel
Strand 3	B	160	168	anti-parallel
Strand 4	B	238	243	anti-parallel
Strand 5	B	215	222	anti-parallel
Strand 6	B	206	212	anti-parallel
Strand 7	B	195	199	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	88	first strand
Strand 2	B	114	116	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	270	271	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	25	26	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	80	first strand
Strand 2	C	139	148	parallel
Strand 3	C	160	169	anti-parallel
Strand 4	C	237	243	anti-parallel
Strand 5	C	215	223	anti-parallel
Strand 6	C	205	212	anti-parallel
Strand 7	C	195	201	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	88	first strand
Strand 2	C	114	116	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	C	270	271	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	80	first strand
Strand 2	D	139	148	parallel
Strand 3	D	160	169	anti-parallel
Strand 4	D	237	243	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	88	first strand
Strand 2	D	114	116	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	200	first strand
Strand 2	D	206	212	anti-parallel
Strand 3	D	215	219	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	D	270	271	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	80	first strand
Strand 2	E	139	148	parallel
Strand 3	E	160	169	anti-parallel
Strand 4	E	237	243	anti-parallel
Strand 5	E	215	223	anti-parallel
Strand 6	E	206	212	anti-parallel
Strand 7	E	195	199	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	88	first strand
Strand 2	E	114	116	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	266	267	first strand
Strand 2	E	270	271	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	79	80	first strand
Strand 2	F	139	148	parallel
Strand 3	F	160	169	anti-parallel
Strand 4	F	237	243	anti-parallel
Strand 5	F	215	223	anti-parallel
Strand 6	F	206	212	anti-parallel
Strand 7	F	195	199	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	88	first strand
Strand 2	F	114	116	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	266	267	first strand
Strand 2	F	270	271	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	79	80	first strand
Strand 2	G	139	148	parallel
Strand 3	G	160	169	anti-parallel
Strand 4	G	237	243	anti-parallel
Strand 5	G	215	222	anti-parallel
Strand 6	G	206	212	anti-parallel
Strand 7	G	195	199	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	86	88	first strand
Strand 2	G	114	116	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	266	267	first strand
Strand 2	G	270	271	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	79	80	first strand
Strand 2	H	139	148	parallel
Strand 3	H	160	169	anti-parallel
Strand 4	H	237	243	anti-parallel
Strand 5	H	215	222	anti-parallel
Strand 6	H	206	212	anti-parallel
Strand 7	H	195	199	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	86	88	first strand
Strand 2	H	114	116	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	266	267	first strand
Strand 2	H	270	271	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	4	first strand
Strand 2	I	25	26	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	79	80	first strand
Strand 2	I	139	148	parallel
Strand 3	I	160	169	anti-parallel
Strand 4	I	237	243	anti-parallel
Strand 5	I	215	222	anti-parallel
Strand 6	I	206	212	anti-parallel
Strand 7	I	195	199	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	86	88	first strand
Strand 2	I	114	116	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	266	267	first strand
Strand 2	I	270	271	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	79	80	first strand
Strand 2	J	139	148	parallel
Strand 3	J	160	169	anti-parallel
Strand 4	J	237	243	anti-parallel
Strand 5	J	215	223	anti-parallel
Strand 6	J	206	212	anti-parallel
Strand 7	J	195	200	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	86	88	first strand
Strand 2	J	114	116	anti-parallel
Strand 3	J	108	109	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	266	267	first strand
Strand 2	J	270	271	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8IFJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8IFJ