Analysis of interatomic Contacts of Structural Units in PDB entry:
8IFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IFM entry

There are 16 chains in PDB entry 8IFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 2SER 420
B
MET 1ILE 507
F
ASN 3SER 420
G
MET 1ILE 507
J
ARG 2SER 420
K
MET 1ILE 507
N
ASN 3SER 420
O
MET 1ILE 507
C
A 1 G 20
D
T 5 A 24
H
A 1 G 20
I
T 5 A 24
L
A 1 G 20
M
T 5 A 24
P
A 1 G 20
Q
T 5 A 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are108 helices in PDB entry 8IFM. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
34 39Right-handed alpha
Helix 3
AA3
A
45 55Right-handed alpha
Helix 4
AA4
A
71 89Right-handed alpha
Helix 5
AA5
A
123 138Right-handed alpha
Helix 6
AA6
A
148 160Right-handed alpha
Helix 7
AA7
A
199 203Right-handed 310
Helix 8
AA8
A
227 231Right-handed 310
Helix 9
AA9
A
243 248Right-handed alpha
Helix 10
AB1
A
257 280Right-handed alpha
Helix 11
AB2
A
300 302Right-handed 310
Helix 12
AB3
A
353 368Right-handed alpha
Helix 13
AB4
A
369 385Right-handed alpha
Helix 14
AB5
B
15 17Right-handed 310
Helix 15
AB6
B
22 31Right-handed alpha
Helix 16
AB7
B
46 62Right-handed alpha
Helix 17
AB8
B
77 83Right-handed alpha
Helix 18
AB9
B
113 131Right-handed alpha
Helix 19
AC1
B
205 215Right-handed alpha
Helix 20
AC2
B
226 230Right-handed alpha
Helix 21
AC3
B
248 264Right-handed alpha
Helix 22
AC4
B
331 351Right-handed alpha
Helix 23
AC5
B
366 377Right-handed alpha
Helix 24
AC6
B
451 463Right-handed alpha
Helix 25
AC7
B
477 493Right-handed alpha
Helix 26
AC8
B
502 506Right-handed 310
Helix 27
AC9
F
10 29Right-handed alpha
Helix 28
AD1
F
34 38Right-handed 310
Helix 29
AD2
F
45 56Right-handed alpha
Helix 30
AD3
F
71 89Right-handed alpha
Helix 31
AD4
F
109 114Right-handed alpha
Helix 32
AD5
F
123 138Right-handed alpha
Helix 33
AD6
F
146 157Right-handed alpha
Helix 34
AD7
F
199 203Right-handed 310
Helix 35
AD8
F
227 231Right-handed 310
Helix 36
AD9
F
243 248Right-handed alpha
Helix 37
AE1
F
257 279Right-handed alpha
Helix 38
AE2
F
300 302Right-handed 310
Helix 39
AE3
F
353 365Right-handed alpha
Helix 40
AE4
F
369 385Right-handed alpha
Helix 41
AE5
G
15 17Right-handed 310
Helix 42
AE6
G
22 30Right-handed alpha
Helix 43
AE7
G
46 62Right-handed alpha
Helix 44
AE8
G
77 83Right-handed alpha
Helix 45
AE9
G
113 131Right-handed alpha
Helix 46
AF1
G
205 214Right-handed alpha
Helix 47
AF2
G
226 230Right-handed alpha
Helix 48
AF3
G
248 264Right-handed alpha
Helix 49
AF4
G
331 351Right-handed alpha
Helix 50
AF5
G
366 377Right-handed alpha
Helix 51
AF6
G
451 463Right-handed alpha
Helix 52
AF7
G
477 493Right-handed alpha
Helix 53
AF8
G
502 506Right-handed 310
Helix 54
AF9
J
15 28Right-handed alpha
Helix 55
AG1
J
44 56Right-handed alpha
Helix 56
AG2
J
65 71Right-handed alpha
Helix 57
AG3
J
71 89Right-handed alpha
Helix 58
AG4
J
123 138Right-handed alpha
Helix 59
AG5
J
147 160Right-handed alpha
Helix 60
AG6
J
199 203Right-handed 310
Helix 61
AG7
J
227 231Right-handed 310
Helix 62
AG8
J
243 248Right-handed alpha
Helix 63
AG9
J
257 279Right-handed alpha
Helix 64
AH1
J
300 302Right-handed 310
Helix 65
AH2
J
354 366Right-handed alpha
Helix 66
AH3
J
369 384Right-handed alpha
Helix 67
AH4
K
15 17Right-handed 310
Helix 68
AH5
K
22 30Right-handed alpha
Helix 69
AH6
K
46 62Right-handed alpha
Helix 70
AH7
K
77 82Right-handed alpha
Helix 71
AH8
K
113 131Right-handed alpha
Helix 72
AH9
K
205 214Right-handed alpha
Helix 73
AI1
K
226 230Right-handed alpha
Helix 74
AI2
K
245 247Right-handed 310
Helix 75
AI3
K
248 264Right-handed alpha
Helix 76
AI4
K
331 351Right-handed alpha
Helix 77
AI5
K
366 377Right-handed alpha
Helix 78
AI6
K
427 430Right-handed 310
Helix 79
AI7
K
451 463Right-handed alpha
Helix 80
AI8
K
477 493Right-handed alpha
Helix 81
AI9
K
502 506Right-handed 310
Helix 82
AJ1
N
14 28Right-handed alpha
Helix 83
AJ2
N
45 55Right-handed alpha
Helix 84
AJ3
N
71 89Right-handed alpha
Helix 85
AJ4
N
109 114Right-handed alpha
Helix 86
AJ5
N
123 138Right-handed alpha
Helix 87
AJ6
N
146 158Right-handed alpha
Helix 88
AJ7
N
199 203Right-handed 310
Helix 89
AJ8
N
227 231Right-handed 310
Helix 90
AJ9
N
243 248Right-handed alpha
Helix 91
AK1
N
257 280Right-handed alpha
Helix 92
AK2
N
300 302Right-handed 310
Helix 93
AK3
N
353 366Right-handed alpha
Helix 94
AK4
N
369 385Right-handed alpha
Helix 95
AK5
O
15 17Right-handed 310
Helix 96
AK6
O
22 30Right-handed alpha
Helix 97
AK7
O
46 62Right-handed alpha
Helix 98
AK8
O
77 82Right-handed alpha
Helix 99
AK9
O
87 91Right-handed 310
Helix 100
AL1
O
113 131Right-handed alpha
Helix 101
AL2
O
205 215Right-handed alpha
Helix 102
AL3
O
226 230Right-handed alpha
Helix 103
AL4
O
248 264Right-handed alpha
Helix 104
AL5
O
331 351Right-handed alpha
Helix 105
AL6
O
366 377Right-handed alpha
Helix 106
AL7
O
451 463Right-handed alpha
Helix 107
AL8
O
477 493Right-handed alpha
Helix 108
AL9
O
502 506Right-handed 310
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There are 42 sheets in PDB entry 8IFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
5 8first strand
Strand 2
A
59 63parallel
Strand 3
A
94 98parallel
Strand 4
A
118 119parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
42 44first strand
Strand 2
F
115 116anti-parallel
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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
169 172first strand
Strand 2
A
409 412anti-parallel
Strand 3
B
2 6parallel
Strand 4
B
409 412anti-parallel
Strand 5
B
417 420anti-parallel
Strand 6
B
441 447anti-parallel
Strand 7
B
384 389anti-parallel
Strand 8
B
356 361parallel
Strand 9
B
278 286parallel
Strand 10
B
296 305anti-parallel
Strand 11
B
311 312anti-parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
169 172first strand
Strand 2
A
409 412anti-parallel
Strand 3
B
2 6parallel
Strand 4
B
409 412anti-parallel
Strand 5
B
417 420anti-parallel
Strand 6
B
441 447anti-parallel
Strand 7
B
384 389anti-parallel
Strand 8
B
356 361parallel
Strand 9
B
278 286parallel
Strand 10
B
296 305anti-parallel
Strand 11
B
315 322anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
283 286first strand
Strand 2
A
291 294anti-parallel
Strand 3
A
317 328anti-parallel
Strand 4
A
311 314anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
283 286first strand
Strand 2
A
291 294anti-parallel
Strand 3
A
317 328anti-parallel
Strand 4
A
334 344anti-parallel
Strand 5
A
175 180anti-parallel
Strand 6
A
400 404anti-parallel
Strand 7
A
390 394anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
208 210first strand
Strand 2
A
213 216anti-parallel
Strand 3
A
184 188anti-parallel
Strand 4
A
239 242anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
304 305first strand
Strand 2
A
308 309anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
12 13first strand
Strand 2
B
19 20anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
92 95first strand
Strand 2
B
41 45parallel
Strand 3
B
138 143parallel
Strand 4
B
221 225parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
425 426first strand
Strand 2
B
431 432anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
32 33first strand
Strand 2
F
4 8parallel
Strand 3
F
57 63parallel
Strand 4
F
94 98parallel
Strand 5
F
118 119parallel
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There are 11 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
169 172first strand
Strand 2
F
409 412anti-parallel
Strand 3
G
2 6parallel
Strand 4
G
409 412anti-parallel
Strand 5
G
417 420anti-parallel
Strand 6
G
441 447anti-parallel
Strand 7
G
382 389anti-parallel
Strand 8
G
356 361parallel
Strand 9
G
278 286parallel
Strand 10
G
296 304anti-parallel
Strand 11
G
312 313anti-parallel
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There are 11 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
169 172first strand
Strand 2
F
409 412anti-parallel
Strand 3
G
2 6parallel
Strand 4
G
409 412anti-parallel
Strand 5
G
417 420anti-parallel
Strand 6
G
441 447anti-parallel
Strand 7
G
382 389anti-parallel
Strand 8
G
356 361parallel
Strand 9
G
278 286parallel
Strand 10
G
296 304anti-parallel
Strand 11
G
320 322anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
327 328first strand
Strand 2
F
334 336anti-parallel
Strand 3
F
175 180anti-parallel
Strand 4
F
401 404anti-parallel
Strand 5
F
390 393anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
208 210first strand
Strand 2
F
213 216anti-parallel
Strand 3
F
184 188anti-parallel
Strand 4
F
239 242anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
283 286first strand
Strand 2
F
291 294anti-parallel
Strand 3
F
317 324anti-parallel
Strand 4
F
311 314anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
283 286first strand
Strand 2
F
291 294anti-parallel
Strand 3
F
317 324anti-parallel
Strand 4
F
338 344anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
304 305first strand
Strand 2
F
308 309anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
12 13first strand
Strand 2
G
19 20anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
92 95first strand
Strand 2
G
41 45parallel
Strand 3
G
138 143parallel
Strand 4
G
221 225parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
425 426first strand
Strand 2
G
431 432anti-parallel
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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
32 33first strand
Strand 2
J
5 8parallel
Strand 3
J
59 63parallel
Strand 4
J
94 98parallel
Strand 5
J
118 119parallel
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There are 11 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
169 171first strand
Strand 2
J
410 412anti-parallel
Strand 3
K
2 6parallel
Strand 4
K
409 411anti-parallel
Strand 5
K
417 420anti-parallel
Strand 6
K
441 447anti-parallel
Strand 7
K
382 389anti-parallel
Strand 8
K
356 361parallel
Strand 9
K
278 286parallel
Strand 10
K
296 304anti-parallel
Strand 11
K
312 313anti-parallel
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There are 11 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
169 171first strand
Strand 2
J
410 412anti-parallel
Strand 3
K
2 6parallel
Strand 4
K
409 411anti-parallel
Strand 5
K
417 420anti-parallel
Strand 6
K
441 447anti-parallel
Strand 7
K
382 389anti-parallel
Strand 8
K
356 361parallel
Strand 9
K
278 286parallel
Strand 10
K
296 304anti-parallel
Strand 11
K
320 322anti-parallel
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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
311 314first strand
Strand 2
J
317 328anti-parallel
Strand 3
J
334 344anti-parallel
Strand 4
J
175 180anti-parallel
Strand 5
J
400 404anti-parallel
Strand 6
J
390 394anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
208 210first strand
Strand 2
J
213 216anti-parallel
Strand 3
J
184 187anti-parallel
Strand 4
J
239 242anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
283 286first strand
Strand 2
J
291 294anti-parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
304 305first strand
Strand 2
J
308 309anti-parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
12 13first strand
Strand 2
K
19 20anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
91 95first strand
Strand 2
K
41 45parallel
Strand 3
K
138 143parallel
Strand 4
K
221 225parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
425 426first strand
Strand 2
K
431 432anti-parallel
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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
31 33first strand
Strand 2
N
4 8parallel
Strand 3
N
59 63parallel
Strand 4
N
94 98parallel
Strand 5
N
118 119parallel
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There are 11 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
166 172first strand
Strand 2
N
409 414anti-parallel
Strand 3
O
2 6parallel
Strand 4
O
409 412anti-parallel
Strand 5
O
417 420anti-parallel
Strand 6
O
441 447anti-parallel
Strand 7
O
382 389anti-parallel
Strand 8
O
356 361parallel
Strand 9
O
278 286parallel
Strand 10
O
296 305anti-parallel
Strand 11
O
311 312anti-parallel
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There are 11 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
166 172first strand
Strand 2
N
409 414anti-parallel
Strand 3
O
2 6parallel
Strand 4
O
409 412anti-parallel
Strand 5
O
417 420anti-parallel
Strand 6
O
441 447anti-parallel
Strand 7
O
382 389anti-parallel
Strand 8
O
356 361parallel
Strand 9
O
278 286parallel
Strand 10
O
296 305anti-parallel
Strand 11
O
315 322anti-parallel
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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
311 314first strand
Strand 2
N
317 328anti-parallel
Strand 3
N
334 344anti-parallel
Strand 4
N
175 180anti-parallel
Strand 5
N
401 404anti-parallel
Strand 6
N
390 393anti-parallel
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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
208 210first strand
Strand 2
N
213 216anti-parallel
Strand 3
N
184 188anti-parallel
Strand 4
N
239 242anti-parallel
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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
283 286first strand
Strand 2
N
291 294anti-parallel
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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
304 305first strand
Strand 2
N
308 309anti-parallel
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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
19 20first strand
Strand 2
O
12 13anti-parallel
Strand 3
O
270 271anti-parallel
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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
92 95first strand
Strand 2
O
41 45parallel
Strand 3
O
138 143parallel
Strand 4
O
221 225parallel
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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
425 426first strand
Strand 2
O
431 432anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il